#include <TransitionMatrixP.h>

Public Types
typedef std::shared_ptr< TransitionMatrixP >	SP

typedef std::shared_ptr< const TransitionMatrixP >	SCP

Public Member Functions
	TransitionMatrixP ()
	Default constructor. More...

TransitionMatrixP &	operator= (const TransitionMatrixP &other)
	Assignment operator. More...

	~TransitionMatrixP ()
	Destructor. More...

void	finish_init ()
	Wrap-up initialization - called by TransitionMatrixPWrapper. More...

void	build_coo_matrix (double flux, IntegerList &ia, IntegerList &ja, DoubleList &a_in)
	Build the full transition matrix (A+D) in the COO compressed format. More...

void	build_full_matrix (double flux, Double2dList &matrix)
	Build the full transition matrix (A+D) as an uncompressed 2D array. More...

void	expand_matrix_pointers ()

void	check_library ()
	Run library consistency check. More...

bool	check (std::vector< std::string > &errors)

void	print_transitions_for (const int parent_id, const int mt_in)
	Print list of transitions for a given reaction. More...

int	find_nuclide_guess (const int id)

bool	find_nuclide_all (Vec_Int *indices, const int id)

int	find_nuclide (const int sublib, const int id)

void	print_info ()
	Print the library contents. More...

double	get_xs (const int n, const int mt_in)
	Get a cross-section from the library. More...

void	set_xs (const int n, const int mt_in, const double new_xs)
	Update a reaction cross-section in the library. More...

void	perturb_xs (const int n, const int mt_in, const double factor)
	Multiply a given cross-section in the library by a factor. More...

void	collect_xs (const IntegerList nuclist, Integer2dList &xslist)
	Get all reactions which involve a given set of nuclides. More...

void	convert_abundances ()
	Calculate wt% of natural abundances on library object (populate wabund) More...

void	transpose_transition_matrix ()
	Transpose compressed transition matrix A. More...

void	cleanup_transitions_for_adjoint (DoubleList concentrations, DoubleList &adjoint_source_term_reaction, DoubleList &adjoint_source_term_decay)

void	fold_flux (double flux, DoubleList &d, DoubleList &a_fold)

void	matvec (Vec_Dbl *vec, const double &flux)

int	first_transition (const int n, bool fortran_offset=false)

int	last_transition (const int n, double flux=0.0)

int	num_massive_daughters (const int mt_in)

bool	has_valid_mts () const
	Does this library have valid MTs? More...

bool	is_mts_properly_ordered (const IntegerList &mts)

void	find_all_mts (IntegerList &mts)
	Find all MTs on the library. More...

void	find_parents (const int nind, IntegerList &parents, IntegerList &mts, IntegerList &tinds)

void	find_daughters (const int nind, IntegerList &daughters, IntegerList &mts, IntegerList &tinds)

void	clear_tinds_2d (Integer2dList &tinds_2d)
	Clear transition indices, e.g. created by setup_fast_transition_access. More...

void	setup_fast_transition_access (const IntegerList &ninds, const IntegerList &mts, Integer2dList &tinds_2d)

void	fast_set_xs (const IntegerList &ninds, const IntegerList &mts, const Integer2dList &tinds_2d, const DoubleList &new_xs)
	Fast setting of cross sections with generated tinds_2d. More...

void	remove_fp_reactions ()
	Remove fission product absorptions. More...

int	get_ilite () const

int	get_iact () const

int	get_ifp () const

int	get_itot () const

int	get_non () const

int	get_nfluxgrp () const

int	get_nti () const

int	get_nfiso () const

int	get_pos () const

int	get_nmonth () const

int	get_nday () const

int	get_nyear () const

float	get_burnup () const

const char *	get_filename () const

const IntegerList *	get_typ_nuc () const

const IntegerList *	get_nucl () const

IntegerList *	get_nucl ()

const IntegerList *	get_kd_ () const

IntegerList *	get_kd_ ()

const IntegerList *	get_non0_ () const

IntegerList *	get_non0_ ()

const IntegerList *	get_kd () const

IntegerList *	get_kd ()

const IntegerList *	get_non0 () const

IntegerList *	get_non0 ()

const IntegerList *	get_loc () const

IntegerList *	get_loc ()

void	get_kd_array (size_t, int *) const

void	get_non0_array (size_t, int *) const

void	get_loc_array (size_t, int *, bool) const

size_t	kd_size () const

size_t	non0_size () const

size_t	loc_size () const

const IntegerList *	get_mt () const

const IntegerList *	get_nucfis () const

const FloatList *	get_dis () const

FloatList *	get_dis ()

const FloatList *	get_genneu () const

FloatList *	get_genneu ()

const FloatList *	get_q () const

const FloatList *	get_fg () const

const FloatList *	get_ampc () const

const FloatList *	get_wmpc () const

const FloatList *	get_abund () const

const FloatList *	get_wabund () const

const FloatList *	get_spectrum () const

const DoubleList *	get_a () const

DoubleList *	get_a ()

const DoubleList *	get_tocap () const

DoubleList *	get_tocap ()

const DoubleList *	get_fiss () const

DoubleList *	get_fiss ()

const FloatList *	get_m () const

const StringList *	get_titles () const

void	split_id (const int nind, int &S, int &I, int &Z, int &A)

std::vector< double >	get_xs_stdvec (const int mt_in)

QString	toQString_title ()

QString	toQString_sizzzaaa (const int nind)

QString	toQString (const int sigdigs, const char *trans_sort, const double eps_sigma, const double eps_decay)

QString	toQString_mts ()

QString	toQString_info ()

QString	toQString_sizes ()

QString	toQString_nuclides (const int sigdigs)

QString	toQString_transitions (const int sigdigs, const char *trans_sort, double const eps_sigma=0.0, double const eps_decay=0.0)

QString	toQString_cross_section_mt (const int mt_in, const int sigdigs, double const eps_sigma)

QString	toQString_cross_sections (const int sigdigs, double const eps_sigma)

void	set_itot (int _itot)

void	set_ilite (int _ilite)

void	set_iact (int _iact)

void	set_ifp (int _ifp)

void	set_non (int _non)

void	set_nmonth (int _month)

void	set_nday (int _day)

void	set_nyear (int _year)

void	set_nfluxgrp (int _nfluxgrp)

void	set_nti (int _nti)

void	set_nfiso (int _nfiso)

void	set_pos (int _pos)

void	set_burnup (float _bu)

void	set_filename (std::string _fn)

void	set_nucl (IntegerList)

void	set_kd_ (IntegerList)

void	set_non0_ (IntegerList)

void	set_kd (IntegerList)

void	set_non0 (IntegerList)

void	set_loc (IntegerList)

void	set_a (DoubleList)

void	set_mt (IntegerList)

void	set_dis (FloatList)

void	set_q (FloatList)

void	set_fg (FloatList)

void	set_ampc (FloatList)

void	set_wmpc (FloatList)

void	set_abund (FloatList)

void	set_wabund (FloatList)

void	set_tocap (DoubleList)

void	set_fiss (DoubleList)

void	set_genneu (FloatList)

void	set_spectrum (FloatList)

void	set_nucfis (IntegerList)

void	set_titles (StringList)

void	populate_transition_ids_cache ()

void	clear_transition_ids_cache ()

void	get_transition_ids (const int nind, Vec_Int &tids)

void	get_possible_transition_ids (Vec_Int &tids)

void	filter_reaction_mts (Vec_Int::const_iterator tids_begin, Vec_Int::const_iterator tids_end, Vec_Int &mts) const

void	set_kappa_fission (const FloatList &)

void	set_kappa_capture (const FloatList &)

const FloatList *	get_kappa_capture () const

const FloatList *	get_kappa_fission () const

double	get_decay_power (const DoubleList &numden, double vol)

double	get_reaction_power (const DoubleList &numden, double vol, double flux)

double	get_fission_power (const DoubleList &numden, double vol, double flux)

double	get_capture_power (const DoubleList &numden, double vol, double flux)

int	add_tally_nuclide (const std::vector< double > &tally_dw, const std::vector< int > &tally_di, const std::vector< double > &tally_rw, const std::vector< int > &tally_ri)

int	add_tally_nuclide (const std::vector< double > &tally_dw, const std::vector< int > &tally_di, const std::vector< double > &tally_rw, const std::vector< int > &tally_ri, int zaid)

int	add_energy_tally (double flux)

int	add_num_fissions_tally ()

int	add_num_captures_tally ()

int	add_concentration_tallies (std::vector< int > &zaids)

const NuclideSet &	nuclide_set () const

Static Public Member Functions
static int	NOT_FOUND ()

Protected Member Functions
void	init_bounds ()
	Initialize library boundaries (for internal function use) More...

void	init_typ_nuc ()
	Initialize typ_nuc array on class. More...

Protected Attributes
int	non
	Number of non-zero off-diagonal elements of the transition matrix A. More...

int	ilite
	Number of light-element activation product nuclides in the library. More...

int	iact
	Number of actinide nuclides in the library. More...

int	ifp
	Number of fission product nuclides in the library. More...

int	itot
	Total number of nuclides in the library. More...

int	nfluxgrp
	Number of energy groups in the collapse spectrum. More...

int	nti
	Number of title cards. More...

int	nfiso
	Number of fissionable isotopes. More...

float	burnup
	Burnup [MWd/tU] of the library. More...

std::string	filename
	Base filename of the library. More...

int	pos
	Position number of the burnup-dependent XS set in the library. More...

int	numLibs
	Number of available burnup positions in the library. More...

int	sizes [3]
	[ilite, iact, ifp] array More...

int	bounds [4][2]
	ilo/ihi for each library (0=all; 1,2,3 = lite/act/fp) More...

IntegerList	typ_nuc
	Gives the nuclide type for each nuclide [1/2/3] [itot]. More...

IntegerList	nucl
	NUCL array (ZAID for all nuclides in the library) [itot]. More...

IntegerList	kd_
	Total number of parents for nuclide I by decay transitions [itot]. More...

IntegerList	non0_
	Total number of parents for nuclide I [itot]. More...

IntegerList	kd
	Pointer [NON] to last decay parent of nuclide I in A [itot]. More...

IntegerList	non0
	Pointer [NON] to last parent of nuclide I in A [itot]. More...

IntegerList	loc
	LOC array. More...

FloatList	dis
	DIS array (Radioactive decay constants) [itot]. More...

FloatList	q
	Q array (Recoverable energy values from decay) [itot]. More...

FloatList	fg
	FG array (Fractions of Q-values due to photons) [itot]. More...

FloatList	ampc
	AMPC array (RCG values for air) [itot]. More...

FloatList	wmpc
	WMPC array (RCG values for water) [itot]. More...

FloatList	abund

FloatList	wabund
	Natural abundances of nuclides in wt% [ilite]. More...

IntegerList	mt
	MT numbers for every transition (A-matrix elements) [non]. More...

IntegerList	nucfis
	List of fissionable nuclides [nfiso]. More...

FloatList	spectrum
	Fluxes used for library collapse [nfluxgrp]. More...

FloatList	m
	Atomic masses in grams/mol [itot]. More...

StringList	titles
	Title cards container. More...

FloatList	b_kappa_capture

FloatList	b_kappa_fission
	Kappa-fission values in MeV [iact]. More...

DoubleList	a
	A array [non]. More...

DoubleList	tocap
	TOCAP array (Effective one-group capture cross-sections) [itot]. More...

DoubleList	fiss
	FISS array (Effective one-group fission cross-sections) [iact]. More...

FloatList	genneu
	GENNEU array (Effective one-group neutron yields) [ilite + act]. More...

int	nmonth
	Month the library was made. More...

int	nday
	Day the library was made. More...

int	nyear
	Year the library was made. More...

bool	_cached_has_valid_mts
	whether the library has valid MTs or not (used internally for checking) More...

std::map< int, std::vector< int > >	d_transition_ids_cache

std::set< int >	d_possible_transition_ids_cache

int	num_tallies
	Number of tally nuclides added to the system. More...

SCP_NuclideSet	b_nuclide_set
	nuclide set for the future More...

Private Member Functions
template<typename V1 , typename V2 >
std::string	emsgn (const int i, const std::string v1msg, const V1 val1, const std::string v2msg, const V2 val2)

template<typename V1 , typename V2 >
std::string	emsgs (const std::string v1msg, const V1 val1, const std::string v2msg, const V2 val2)

Friends
class	Origen::Library

Detailed Description

Examples:: exNEAMS.cpp, tstCase.cpp, tstMaterialBuffer.cpp, tstTransitionMatrixP.cpp, and tstTransitionMatrixUpdater.cpp.

Member Typedef Documentation

typedef std::shared_ptr<TransitionMatrixP> SP

typedef std::shared_ptr<const TransitionMatrixP> SCP

Constructor & Destructor Documentation

TransitionMatrixP ( )

Default constructor.

~TransitionMatrixP ( )

Destructor.

Member Function Documentation

TransitionMatrixP & operator= ( const TransitionMatrixP & other )

Assignment operator.

void finish_init ( )

Wrap-up initialization - called by TransitionMatrixPWrapper.

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::b_kappa_capture, TransitionMatrixP::b_kappa_fission, TransitionMatrixP::convert_abundances(), TransitionMatrixP::expand_matrix_pointers(), EnergyResource::getKappaValues(), TransitionMatrixP::iact, TransitionMatrixP::ifp, TransitionMatrixP::ilite, TransitionMatrixP::init_bounds(), TransitionMatrixP::init_typ_nuc(), TransitionMatrixP::itot, TransitionMatrixP::m, TransitionMatrixP::nucl, and TransitionMatrixP::split_id().

Referenced by TEST().

void build_coo_matrix	(	double	flux,
		IntegerList &	ia,
		IntegerList &	ja,
		DoubleList &	a_in
	)

Build the full transition matrix (A+D) in the COO compressed format.

Parameters

flux	flux in [n/cm^2*s]
ia	row indices of non-zero matrix elements
ja	column indices of non-zero matrix elements
a_in	values of non-zero matrix elements

See also: : build_full_matrix()

References TransitionMatrixP::build_full_matrix().

void build_full_matrix	(	double	flux,
		Double2dList &	matrix
	)

Build the full transition matrix (A+D) as an uncompressed 2D array.

Parameters

flux	flux in [n/cm^2*s]
matrix	full transition matrix [itot, itot]

See also: : build_coo_matrix()

References TransitionMatrixP::a, TransitionMatrixP::dis, TransitionMatrixP::first_transition(), TransitionMatrixP::itot, TransitionMatrixP::kd, TransitionMatrixP::last_transition(), TransitionMatrixP::loc, TransitionMatrixP::non0, and TransitionMatrixP::tocap.

Referenced by TransitionMatrixP::build_coo_matrix(), and TransitionMatrixP::check().

void expand_matrix_pointers ( )

Convert KD and non0 arrays to "pointer" style (they point to the last parent in the A matrix)

References TransitionMatrixP::itot, TransitionMatrixP::kd, TransitionMatrixP::kd_, TransitionMatrixP::non, TransitionMatrixP::non0, and TransitionMatrixP::non0_.

Referenced by TransitionMatrixP::cleanup_transitions_for_adjoint(), TransitionMatrixP::finish_init(), and TransitionMatrixP::transpose_transition_matrix().

void check_library ( )

Run library consistency check.

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::a, TransitionMatrixP::itot, TransitionMatrixP::kd, TransitionMatrixP::loc, TransitionMatrixP::non, and TransitionMatrixP::non0.

Referenced by TEST().

bool check ( std::vector< std::string > & errors )

void print_transitions_for	(	const int	parent_id,
		const int	mt_in
	)

Print list of transitions for a given reaction.

Parameters

parent_id	Parent nuclide ID (ZZAAAI)
mt_in	MT number for reaction

References TransitionMatrixP::a, TransitionMatrixP::itot, TransitionMatrixP::kd, TransitionMatrixP::loc, TransitionMatrixP::m, TransitionMatrixP::mt, TransitionMatrixP::non0, and TransitionMatrixP::nucl.

int NOT_FOUND ( )

static

References NuclideSet::NOT_FOUND().

int find_nuclide_guess ( const int id )

Find nuclide by ZZZAAAI id, guessing which sublib

Parameters

id	Nuclide ID in ZZZAAAI format

Returns: Index in nucl array (returns NOT_FOUND() if not found)

See also: find_nuclide(), find_nuclide_all()

References TransitionMatrixP::b_nuclide_set, and NuclideSet::convert_zzzaaai_to_izzzaaa().

bool find_nuclide_all	(	Vec_Int *	indices,
		const int	id
	)

Find all instances of nuclide by ZZZAAAI id

Parameters

id	Nuclide ID in ZZZAAAI format

Returns: Index in nucl array (returns NOT_FOUND() if not found)

See also: find_nuclide(), find_nuclide_guess()

References TransitionMatrixP::b_nuclide_set, and NuclideSet::convert_zzzaaai_to_izzzaaa().

int find_nuclide	(	const int	sublib,
		const int	id
	)

Find nuclide by id ZZZAAAI and sublib

Parameters

sublib	Nuclide sublibrary number (1/2/3 - LT/AC/FP)
id	Nuclide ID in ZZZAAAI format

Returns: Index in nucl array for ZAID (returns NOT_FOUND() if not found)

See also: find_nuclide_guess(), find_nuclide_all()

Examples:: tstTransitionMatrixUpdater.cpp.

References TransitionMatrixP::b_nuclide_set, and NuclideSet::convert_zzzaaai_to_izzzaaa().

Referenced by Case::load_new_concentrations(), and Origen::test::TEST().

void print_info ( )

Print the library contents.

References TransitionMatrixP::filename, TransitionMatrixP::iact, TransitionMatrixP::ifp, TransitionMatrixP::ilite, TransitionMatrixP::itot, TransitionMatrixP::nday, TransitionMatrixP::nmonth, TransitionMatrixP::non, TransitionMatrixP::nti, TransitionMatrixP::nyear, TransitionMatrixP::pos, and TransitionMatrixP::titles.

double get_xs	(	const int	n,
		const int	mt_in
	)

Get a cross-section from the library.

Parameters

n	Parent index
mt_in	Reaction MT value

Returns: Reaction cross-section

References TransitionMatrixP::a, TransitionMatrixP::bounds, TransitionMatrixP::fiss, TransitionMatrixP::has_valid_mts(), TransitionMatrixP::ilite, TransitionMatrixP::itot, TransitionMatrixP::loc, TransitionMatrixP::mt, TransitionMatrixP::non, TransitionMatrixP::nucl, Origen::nuclide_in_bounds(), TransitionMatrixP::num_massive_daughters(), Origen::SUBLIB_2AC, and TransitionMatrixP::tocap.

Referenced by TransitionMatrixP::perturb_xs().

void set_xs	(	const int	n,
		const int	mt_in,
		const double	new_xs
	)

Update a reaction cross-section in the library.

Parameters

n	Parent index
mt_in	Reaction MT value
new_xs	New reaction cross-section

References TransitionMatrixP::a, TransitionMatrixP::bounds, TransitionMatrixP::fiss, TransitionMatrixP::has_valid_mts(), TransitionMatrixP::ilite, TransitionMatrixP::itot, TransitionMatrixP::loc, TransitionMatrixP::mt, TransitionMatrixP::non, TransitionMatrixP::nucl, Origen::nuclide_in_bounds(), TransitionMatrixP::num_massive_daughters(), Origen::only_set_component(), Origen::SUBLIB_2AC, and TransitionMatrixP::tocap.

Referenced by TransitionMatrixP::perturb_xs().

void perturb_xs	(	const int	n,
		const int	mt_in,
		const double	factor
	)

Multiply a given cross-section in the library by a factor.

Parameters

n	Parent index
mt_in	Reaction MT value
factor	Perturbation factor for cross-section

References TransitionMatrixP::get_xs(), and TransitionMatrixP::set_xs().

void collect_xs	(	const IntegerList	nuclist,
		Integer2dList &	xslist
	)

Get all reactions which involve a given set of nuclides.

Parameters

nuclist	List of nuclides (indices in N)
xslist	Array of triplets [parent index, reaction MT, parent ZAID]

References TransitionMatrixP::kd, TransitionMatrixP::loc, TransitionMatrixP::mt, TransitionMatrixP::non, TransitionMatrixP::non0, and TransitionMatrixP::nucl.

void convert_abundances ( )

Calculate wt% of natural abundances on library object (populate wabund)

References TransitionMatrixP::abund, TransitionMatrixP::ilite, TransitionMatrixP::m, TransitionMatrixP::nucl, and TransitionMatrixP::wabund.

Referenced by TransitionMatrixP::finish_init().

void transpose_transition_matrix ( )

Transpose compressed transition matrix A.

References TransitionMatrixP::a, TransitionMatrixP::expand_matrix_pointers(), TransitionMatrixP::itot, TransitionMatrixP::kd_, TransitionMatrixP::loc, TransitionMatrixP::non, and TransitionMatrixP::non0_.

void cleanup_transitions_for_adjoint	(	DoubleList	concentrations,
		DoubleList &	adjoint_source_term_reaction,
		DoubleList &	adjoint_source_term_decay
	)

Remove stable nuclides from the transition matrix and establish them as a fixed source term

Parameters

concentrations	Nuclide concentrations [itot]
adjoint_source_term_reaction	Reaction components of source term [itot]
adjoint_source_term_decay	Decay components of source term [itot]

References TransitionMatrixP::a, TransitionMatrixP::dis, TransitionMatrixP::expand_matrix_pointers(), TransitionMatrixP::itot, TransitionMatrixP::kd_, TransitionMatrixP::loc, TransitionMatrixP::non, TransitionMatrixP::non0_, and TransitionMatrixP::tocap.

void fold_flux	(	double	flux,
		DoubleList &	d,
		DoubleList &	a_fold
	)

Produce the compressed transition matrix A and the diagonal array D, applying the given flux

Parameters

flux	Flux in [n/cm^2*s]
d	Diagonal array D [itot]
a_fold	Compressed transition matrix A [non]

Examples:: tstTransitionMatrixP.cpp, and tstTransitionMatrixUpdater.cpp.

References TransitionMatrixP::a, TransitionMatrixP::dis, TransitionMatrixP::itot, TransitionMatrixP::kd, TransitionMatrixP::non, TransitionMatrixP::non0, and TransitionMatrixP::tocap.

Referenced by GetDenseMatrix(), Solver_cram::solve_impl(), Solver_matrex::solve_impl(), and Origen::test::TEST().

void matvec	(	Vec_Dbl *	vec,
		const double &	flux
	)

Produce an inplace matrix vector multiply vec = (Af*flux + Ad + d)*vec where Af is flux-proportional matrix Ad is decay matrix

Parameters

flux	flux in [n/cm^2*s]
d	diagonal to add to decay matrix [itot]
vec	input/output [itot]

References TransitionMatrixP::a, TransitionMatrixP::dis, TransitionMatrixP::first_transition(), TransitionMatrixP::itot, TransitionMatrixP::kd, TransitionMatrixP::last_transition(), TransitionMatrixP::loc, TransitionMatrixP::non0, and TransitionMatrixP::tocap.

Referenced by Solver_Fake::solve_impl().

int first_transition	(	const int	n,
		bool	fortran_offset = `false`
	)

Return the index (in A) of the first transition of the nuclide with index n (in N)

Parameters

n	Nuclide index in nucl

Returns: Index (in A) of first transition of the nuclide with index n (in nucl)

References TransitionMatrixP::itot, TransitionMatrixP::non, TransitionMatrixP::non0, and TransitionMatrixP::non0_.

Referenced by TransitionMatrixP::build_full_matrix(), TransitionMatrixP::check(), TransitionMatrixP::find_parents(), TransitionMatrixP::matvec(), and TransitionMatrixP::toQString_transitions().

int last_transition	(	const int	n,
		double	flux = `0.0`
	)

Return the index (in A) of the last transition of the nuclide with index n (in N)

Parameters

n	Nuclide index in nucl
flux	[OPTIONAL] Flux in [n/cm^2*s]

Returns: Index (in A) of last transition of nuclide with index n (in nucl)

References TransitionMatrixP::itot, TransitionMatrixP::kd, TransitionMatrixP::non, and TransitionMatrixP::non0.

Referenced by TransitionMatrixP::build_full_matrix(), TransitionMatrixP::check(), TransitionMatrixP::find_parents(), TransitionMatrixP::matvec(), and TransitionMatrixP::toQString_transitions().

int num_massive_daughters ( const int mt_in )

Number of massive daughters resulting from a given reaction (used to normalize set_xs/get_xs)

Parameters

mt	reaction MT

Returns: number of daughters with mass

Referenced by TransitionMatrixP::fast_set_xs(), TransitionMatrixP::get_xs(), TransitionMatrixP::get_xs_stdvec(), and TransitionMatrixP::set_xs().

bool has_valid_mts ( ) const

Does this library have valid MTs?

Returns: true or false

References TransitionMatrixP::_cached_has_valid_mts, TransitionMatrixP::mt, and TransitionMatrixP::non.

Referenced by TransitionMatrixP::fast_set_xs(), TransitionMatrixP::get_xs(), TransitionMatrixP::set_xs(), and TransitionMatrixP::setup_fast_transition_access().

bool is_mts_properly_ordered ( const IntegerList & mts )

Are the MTs properly ordered in a transition list (decays then reactions)?

Returns: true or false

References kernel_matrex::decay().

Referenced by TransitionMatrixP::find_parents().

void find_all_mts ( IntegerList & mts )

Find all MTs on the library.

Parameters

mts	list of MTs [OUTPUT]

References TransitionMatrixP::mt, and TransitionMatrixP::non.

Referenced by TransitionMatrixP::toQString_cross_sections(), and TransitionMatrixP::toQString_mts().

void find_parents	(	const int	nind,
		IntegerList &	parents,
		IntegerList &	mts,
		IntegerList &	tinds
	)

Determine from a target nuclide, all parents and transitions creating the target.

Parameters

nind	target nuclide (index)
parents	list of parents of the target [OUTPUT]
mts	list of MTs for those transitions to the target [OUTPUT]
tinds	list of transition matrix indices for the transitions [OUTPUT]

References TransitionMatrixP::first_transition(), TransitionMatrixP::is_mts_properly_ordered(), TransitionMatrixP::itot, TransitionMatrixP::last_transition(), TransitionMatrixP::loc, and TransitionMatrixP::mt.

void find_daughters	(	const int	nind,
		IntegerList &	daughters,
		IntegerList &	mts,
		IntegerList &	tinds
	)

Determine from a target nuclide, all daughters and transitions to those daughters.

Parameters

nind	target nuclide (index)
daughters	list of daughters of the target [OUTPUT]
mts	list of MTs for those transitions from the target [OUTPUT]
tinds	list of transition matrix indices for the transitions [OUTPUT]

References TransitionMatrixP::itot, TransitionMatrixP::loc, TransitionMatrixP::mt, and TransitionMatrixP::non0_.

Referenced by TransitionMatrixP::setup_fast_transition_access(), and TransitionMatrixP::toQString_nuclides().

void clear_tinds_2d ( Integer2dList & tinds_2d )

Clear transition indices, e.g. created by setup_fast_transition_access.

Parameters

tinds_2d lists the indices of the transitions (Integer2dList)

Referenced by TransitionMatrixP::setup_fast_transition_access().

void setup_fast_transition_access	(	const IntegerList &	ninds,
		const IntegerList &	mts,
		Integer2dList &	tinds_2d
	)

Setup fast transitions for accessing cross sections by nuclide index and MT.

Parameters

ninds	target nuclides (index)
mts	target MTs
tinds_2d	for each ninds[i] and mts[i], lists the indices of the transitions [OUTPUT]

References TransitionMatrixP::bounds, TransitionMatrixP::clear_tinds_2d(), TransitionMatrixP::find_daughters(), TransitionMatrixP::fiss, TransitionMatrixP::has_valid_mts(), TransitionMatrixP::ilite, TransitionMatrixP::nucl, Origen::SUBLIB_2AC, and Origen::toQString_tinds_2d().

void fast_set_xs	(	const IntegerList &	ninds,
		const IntegerList &	mts,
		const Integer2dList &	tinds_2d,
		const DoubleList &	new_xs
	)

Fast setting of cross sections with generated tinds_2d.

Parameters

ninds	list of target nuclides (index)
mts	list of target MTs
tinds_2d	created from setup_fast_transition_access
new_xs	list of new cross sections

References TransitionMatrixP::a, TransitionMatrixP::fiss, TransitionMatrixP::has_valid_mts(), TransitionMatrixP::ilite, TransitionMatrixP::num_massive_daughters(), TransitionMatrixP::tocap, and Origen::toQString_tinds_2d().

void remove_fp_reactions ( )

Remove fission product absorptions.

References TransitionMatrixP::a, TransitionMatrixP::bounds, TransitionMatrixP::itot, TransitionMatrixP::kd, TransitionMatrixP::loc, TransitionMatrixP::non0, Origen::SUBLIB_3FP, TransitionMatrixP::tocap, and TransitionMatrixP::typ_nuc.

int get_ilite ( ) const

inline

Examples:: tstMaterialBuffer.cpp, and tstTransitionMatrixP.cpp.

References TransitionMatrixP::ilite.

Referenced by h5_write_trx(), Case::load_new_concentrations(), and TEST().

int get_iact ( ) const

inline

Examples:: tstMaterialBuffer.cpp, and tstTransitionMatrixP.cpp.

References TransitionMatrixP::iact.

Referenced by TransitionMatrixUpdater::get_transition_matrix(), h5_write_trx(), and TEST().

int get_ifp ( ) const

inline

Examples:: tstMaterialBuffer.cpp.

References TransitionMatrixP::ifp.

Referenced by h5_write_trx().

int get_itot ( ) const

inline

Examples:: tstMaterialBuffer.cpp, tstTransitionMatrixP.cpp, and tstTransitionMatrixUpdater.cpp.

References TransitionMatrixP::itot.

Referenced by Case::Case(), GetDenseMatrix(), h5_write_trx(), Case::load_new_concentrations(), Case::set_conc(), Case::set_conc0(), Case::set_feed_rate(), Case::set_feed_rates_by_vector(), Case::set_initial_concentrations_by_vector(), Case::set_reprocessing_rate(), Solver_cram::solve_impl(), Solver_matrex::solve_impl(), TEST(), and Origen::test::TEST().

int get_non ( ) const

inline

Examples:: tstTransitionMatrixP.cpp, and tstTransitionMatrixUpdater.cpp.

References TransitionMatrixP::non.

Referenced by Solver_cram::solve_impl(), Solver_matrex::solve_impl(), TEST(), and Origen::test::TEST().

int get_nfluxgrp ( ) const

inline

Examples:: tstMaterialBuffer.cpp.

References TransitionMatrixP::nfluxgrp.

Referenced by h5_write_trx().

int get_nti ( ) const

inline

References TransitionMatrixP::nti.

int get_nfiso ( ) const

inline

References TransitionMatrixP::nfiso.

int get_pos ( ) const

inline

References TransitionMatrixP::pos.

int get_nmonth ( ) const

inline

References TransitionMatrixP::nmonth.

int get_nday ( ) const

inline

References TransitionMatrixP::nday.

int get_nyear ( ) const

inline

References TransitionMatrixP::nyear.

float get_burnup ( ) const

inline

References TransitionMatrixP::burnup.

const char* get_filename ( ) const

inline

References TransitionMatrixP::filename.

const IntegerList* get_typ_nuc ( ) const

inline

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::typ_nuc.

Referenced by Case::set_feed_rates_by_vector(), Case::set_initial_concentrations_by_vector(), and TEST().

const IntegerList* get_nucl ( ) const

inline

Examples:: tstTransitionMatrixUpdater.cpp.

References TransitionMatrixP::nucl.

Referenced by Case::load_new_concentrations(), Case::set_feed_rates_by_vector(), Case::set_initial_concentrations_by_vector(), Solver_cram::solve_impl(), and Origen::test::TEST().

IntegerList* get_nucl ( )

inline

References TransitionMatrixP::nucl.

const IntegerList* get_kd_ ( ) const

inline

Examples:: tstTransitionMatrixUpdater.cpp.

References TransitionMatrixP::kd_.

Referenced by TransitionMatrixUpdater::get_transition_matrix(), Solver_cram::solve_impl(), and Origen::test::TEST().

IntegerList* get_kd_ ( )

inline

References TransitionMatrixP::kd_.

const IntegerList* get_non0_ ( ) const

inline

Examples:: tstTransitionMatrixP.cpp, and tstTransitionMatrixUpdater.cpp.

References TransitionMatrixP::non0_.

Referenced by TransitionMatrixUpdater::get_transition_matrix(), GetDenseMatrix(), Solver_cram::solve_impl(), and Origen::test::TEST().

IntegerList* get_non0_ ( )

inline

References TransitionMatrixP::non0_.

const IntegerList* get_kd ( ) const

inline

References TransitionMatrixP::kd.

IntegerList* get_kd ( )

inline

References TransitionMatrixP::kd.

const IntegerList* get_non0 ( ) const

inline

References TransitionMatrixP::non0.

IntegerList* get_non0 ( )

inline

References TransitionMatrixP::non0.

const IntegerList* get_loc ( ) const

inline

Examples:: tstTransitionMatrixP.cpp, and tstTransitionMatrixUpdater.cpp.

References TransitionMatrixP::loc.

Referenced by TransitionMatrixUpdater::get_transition_matrix(), GetDenseMatrix(), Solver_cram::solve_impl(), TEST(), and Origen::test::TEST().

IntegerList* get_loc ( )

inline

References TransitionMatrixP::loc.

void get_kd_array	(	size_t	n,
		int *	out
	)		const

References TransitionMatrixP::itot, and TransitionMatrixP::kd.

void get_non0_array	(	size_t	n,
		int *	out
	)		const

References TransitionMatrixP::itot, and TransitionMatrixP::non0.

void get_loc_array	(	size_t	n,
		int *	out,
		bool	fortran_offset
	)		const

References TransitionMatrixP::loc, and TransitionMatrixP::non.

size_t kd_size ( ) const

inline

References TransitionMatrixP::itot.

size_t non0_size ( ) const

inline

References TransitionMatrixP::itot.

size_t loc_size ( ) const

inline

References TransitionMatrixP::non.

const IntegerList* get_mt ( ) const

inline

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::mt.

Referenced by TransitionMatrixUpdater::get_transition_matrix(), and TEST().

const IntegerList* get_nucfis ( ) const

inline

References TransitionMatrixP::nucfis.

const FloatList* get_dis ( ) const

inline

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::dis.

Referenced by Case::load_new_concentrations(), and TEST().

FloatList* get_dis ( )

inline

References TransitionMatrixP::dis.

const FloatList* get_genneu ( ) const

inline

Examples:: tstMaterialBuffer.cpp.

References TransitionMatrixP::genneu.

Referenced by TransitionMatrixUpdater::get_transition_matrix(), and h5_write_trx().

FloatList* get_genneu ( )

inline

References TransitionMatrixP::genneu.

const FloatList* get_q ( ) const

inline

References TransitionMatrixP::q.

const FloatList* get_fg ( ) const

inline

References TransitionMatrixP::fg.

const FloatList* get_ampc ( ) const

inline

References TransitionMatrixP::ampc.

const FloatList* get_wmpc ( ) const

inline

References TransitionMatrixP::wmpc.

const FloatList* get_abund ( ) const

inline

References TransitionMatrixP::abund.

Referenced by Case::load_new_concentrations().

const FloatList* get_wabund ( ) const

inline

References TransitionMatrixP::wabund.

Referenced by Case::load_new_concentrations().

const FloatList* get_spectrum ( ) const

inline

Examples:: tstMaterialBuffer.cpp.

References TransitionMatrixP::spectrum.

Referenced by h5_write_trx().

const DoubleList* get_a ( ) const

inline

Examples:: tstMaterialBuffer.cpp, and tstTransitionMatrixP.cpp.

References TransitionMatrixP::a.

Referenced by TransitionMatrixUpdater::get_transition_matrix(), h5_write_trx(), and TEST().

DoubleList* get_a ( )

inline

References TransitionMatrixP::a.

const DoubleList* get_tocap ( ) const

inline

Examples:: tstMaterialBuffer.cpp, and tstTransitionMatrixP.cpp.

References TransitionMatrixP::tocap.

Referenced by TransitionMatrixUpdater::get_transition_matrix(), h5_write_trx(), and TEST().

DoubleList* get_tocap ( )

inline

References TransitionMatrixP::tocap.

const DoubleList* get_fiss ( ) const

inline

Examples:: tstMaterialBuffer.cpp, and tstTransitionMatrixP.cpp.

References TransitionMatrixP::fiss.

Referenced by TransitionMatrixUpdater::get_transition_matrix(), h5_write_trx(), and TEST().

DoubleList* get_fiss ( )

inline

References TransitionMatrixP::fiss.

const FloatList* get_m ( ) const

inline

References TransitionMatrixP::m.

Referenced by Case::load_new_concentrations().

const StringList* get_titles ( ) const

inline

References TransitionMatrixP::titles.

void split_id	(	const int	nind,
		int &	S,
		int &	I,
		int &	Z,
		int &	A
	)

References TransitionMatrixP::nucl, and TransitionMatrixP::typ_nuc.

Referenced by TransitionMatrixP::finish_init(), TransitionMatrixP::toQString_nuclides(), and TransitionMatrixP::toQString_sizzzaaa().

std::vector< double > get_xs_stdvec ( const int mt_in )

References TransitionMatrixP::a, TransitionMatrixP::fiss, TransitionMatrixP::iact, TransitionMatrixP::ilite, TransitionMatrixP::loc, TransitionMatrixP::mt, TransitionMatrixP::nucl, TransitionMatrixP::num_massive_daughters(), and TransitionMatrixP::tocap.

Referenced by TransitionMatrixP::toQString_cross_section_mt().

QString toQString_title ( )

References TransitionMatrixP::nti, and TransitionMatrixP::titles.

Referenced by TransitionMatrixP::toQString_info().

QString toQString_sizzzaaa ( const int nind )

References TransitionMatrixP::split_id().

Referenced by TransitionMatrixP::emsgn(), TransitionMatrixP::toQString_cross_section_mt(), TransitionMatrixP::toQString_nuclides(), and TransitionMatrixP::toQString_transitions().

QString toQString	(	const int	sigdigs,
		const char *	trans_sort,
		const double	eps_sigma,
		const double	eps_decay
	)

Examples:: tstTransitionMatrixUpdater.cpp.

References TransitionMatrixP::toQString_cross_sections(), TransitionMatrixP::toQString_info(), TransitionMatrixP::toQString_mts(), TransitionMatrixP::toQString_nuclides(), TransitionMatrixP::toQString_sizes(), and TransitionMatrixP::toQString_transitions().

Referenced by Origen::test::TEST().

QString toQString_mts ( )

References TransitionMatrixP::find_all_mts().

Referenced by TransitionMatrixP::toQString().

QString toQString_info ( )

References TransitionMatrixP::burnup, TransitionMatrixP::filename, TransitionMatrixP::nti, TransitionMatrixP::pos, and TransitionMatrixP::toQString_title().

Referenced by TransitionMatrixP::toQString().

QString toQString_sizes ( )

References TransitionMatrixP::iact, TransitionMatrixP::ifp, TransitionMatrixP::ilite, TransitionMatrixP::itot, TransitionMatrixP::nfiso, TransitionMatrixP::nfluxgrp, TransitionMatrixP::non, and TransitionMatrixP::nti.

Referenced by TransitionMatrixP::toQString().

QString toQString_nuclides ( const int sigdigs )

References TransitionMatrixP::find_daughters(), TransitionMatrixP::m, TransitionMatrixP::nucl, TransitionMatrixP::split_id(), and TransitionMatrixP::toQString_sizzzaaa().

Referenced by TransitionMatrixP::toQString().

QString toQString_transitions	(	const int	sigdigs,
		const char *	trans_sort,
		double const	eps_sigma = `0.0`,
		double const	eps_decay = `0.0`
	)

References TransitionMatrixP::a, TransitionMatrixP::first_transition(), TransitionMatrixP::last_transition(), TransitionMatrixP::loc, TransitionMatrixP::mt, TransitionMatrixP::nucl, and TransitionMatrixP::toQString_sizzzaaa().

Referenced by TransitionMatrixP::toQString().

QString toQString_cross_section_mt	(	const int	mt_in,
		const int	sigdigs,
		double const	eps_sigma = `0.0`
	)

References TransitionMatrixP::get_xs_stdvec(), TransitionMatrixP::nucl, and TransitionMatrixP::toQString_sizzzaaa().

Referenced by TransitionMatrixP::toQString_cross_sections().

QString toQString_cross_sections	(	const int	sigdigs,
		double const	eps_sigma = `0.0`
	)

References TransitionMatrixP::find_all_mts(), and TransitionMatrixP::toQString_cross_section_mt().

Referenced by TransitionMatrixP::toQString().

void set_itot ( int _itot )

inline

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::itot.

Referenced by TEST().

void set_ilite ( int _ilite )

inline

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::ilite.

Referenced by TEST().

void set_iact ( int _iact )

inline

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::iact.

Referenced by TEST().

void set_ifp ( int _ifp )

inline

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::ifp.

Referenced by TEST().

void set_non ( int _non )

inline

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::non.

Referenced by TEST().

void set_nmonth ( int _month )

inline

References TransitionMatrixP::nmonth.

void set_nday ( int _day )

inline

References TransitionMatrixP::nday.

void set_nyear ( int _year )

inline

References TransitionMatrixP::nyear.

void set_nfluxgrp ( int _nfluxgrp )

inline

References TransitionMatrixP::nfluxgrp.

void set_nti ( int _nti )

inline

References TransitionMatrixP::nti.

void set_nfiso ( int _nfiso )

inline

References TransitionMatrixP::nfiso.

void set_pos ( int _pos )

inline

References TransitionMatrixP::pos.

Referenced by Library::populate_transition_matrix_reaction().

void set_burnup ( float _bu )

inline

References TransitionMatrixP::burnup.

void set_filename ( std::string _fn )

inline

References TransitionMatrixP::filename.

void set_nucl ( IntegerList _nucl )

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::itot, and TransitionMatrixP::nucl.

Referenced by TEST().

void set_kd_ ( IntegerList _kd_ )

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::itot, and TransitionMatrixP::kd_.

Referenced by TEST().

void set_non0_ ( IntegerList _non0_ )

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::itot, and TransitionMatrixP::non0_.

Referenced by TEST().

void set_kd ( IntegerList _kd )

References TransitionMatrixP::itot, and TransitionMatrixP::kd.

void set_non0 ( IntegerList _non0 )

References TransitionMatrixP::itot, and TransitionMatrixP::non0.

void set_loc ( IntegerList _loc )

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::loc, and TransitionMatrixP::non.

Referenced by TEST().

void set_a ( DoubleList _a )

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::a, and TransitionMatrixP::non.

Referenced by TEST().

void set_mt ( IntegerList _mt )

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::mt, and TransitionMatrixP::non.

Referenced by TEST().

void set_dis ( FloatList _dis )

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::dis, and TransitionMatrixP::itot.

Referenced by TEST().

void set_q ( FloatList _q )

References TransitionMatrixP::itot, and TransitionMatrixP::q.

void set_fg ( FloatList _fg )

References TransitionMatrixP::fg, and TransitionMatrixP::itot.

void set_ampc ( FloatList _ampc )

References TransitionMatrixP::ampc, and TransitionMatrixP::itot.

void set_wmpc ( FloatList _wmpc )

References TransitionMatrixP::itot, and TransitionMatrixP::wmpc.

void set_abund ( FloatList _abund )

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::abund, and TransitionMatrixP::ilite.

Referenced by TEST().

void set_wabund ( FloatList _wabund )

References TransitionMatrixP::ilite, and TransitionMatrixP::wabund.

void set_tocap ( DoubleList _tocap )

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::itot, and TransitionMatrixP::tocap.

Referenced by TEST().

void set_fiss ( DoubleList _fiss )

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::fiss, and TransitionMatrixP::iact.

Referenced by TEST().

void set_genneu ( FloatList _genneu )

References TransitionMatrixP::genneu, TransitionMatrixP::iact, and TransitionMatrixP::ilite.

void set_spectrum ( FloatList _spectrum )

References TransitionMatrixP::nfluxgrp, and TransitionMatrixP::spectrum.

void set_nucfis ( IntegerList _nucfis )

References TransitionMatrixP::nfiso, and TransitionMatrixP::nucfis.

void set_titles ( StringList _titles )

References TransitionMatrixP::nti, and TransitionMatrixP::titles.

void populate_transition_ids_cache ( )

References TransitionMatrixP::clear_transition_ids_cache(), TransitionMatrixP::d_possible_transition_ids_cache, TransitionMatrixP::d_transition_ids_cache, TransitionMatrixP::itot, TransitionMatrixP::loc, TransitionMatrixP::mt, and TransitionMatrixP::non0_.

Referenced by TransitionMatrixP::get_possible_transition_ids(), and TransitionMatrixP::get_transition_ids().

void clear_transition_ids_cache ( )

References TransitionMatrixP::d_possible_transition_ids_cache, and TransitionMatrixP::d_transition_ids_cache.

Referenced by TransitionMatrixP::populate_transition_ids_cache().

void get_transition_ids	(	const int	nind,
		Vec_Int &	tids
	)

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::d_transition_ids_cache, and TransitionMatrixP::populate_transition_ids_cache().

Referenced by TEST().

void get_possible_transition_ids ( Vec_Int & tids )

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::d_possible_transition_ids_cache, TransitionMatrixP::d_transition_ids_cache, and TransitionMatrixP::populate_transition_ids_cache().

Referenced by TEST().

void filter_reaction_mts	(	Vec_Int::const_iterator	tids_begin,
		Vec_Int::const_iterator	tids_end,
		Vec_Int &	mts
	)		const

Examples:: tstTransitionMatrixP.cpp.

Referenced by TEST().

void set_kappa_fission ( const FloatList & kappa_fission )

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::b_kappa_fission.

Referenced by TEST().

void set_kappa_capture ( const FloatList & kappa_capture )

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::b_kappa_capture.

Referenced by TEST().

const FloatList * get_kappa_capture ( ) const

Examples:: tstMaterialBuffer.cpp.

References TransitionMatrixP::b_kappa_capture.

Referenced by h5_write_trx().

const FloatList * get_kappa_fission ( ) const

Examples:: tstMaterialBuffer.cpp.

References TransitionMatrixP::b_kappa_fission.

Referenced by h5_write_trx().

double get_decay_power	(	const DoubleList &	numden,
		double	vol
	)

References TransitionMatrixP::dis, TransitionMatrixP::itot, and TransitionMatrixP::q.

double get_reaction_power	(	const DoubleList &	numden,
		double	vol,
		double	flux
	)

References TransitionMatrixP::get_capture_power(), and TransitionMatrixP::get_fission_power().

double get_fission_power	(	const DoubleList &	numden,
		double	vol,
		double	flux
	)

References TransitionMatrixP::b_kappa_fission, TransitionMatrixP::bounds, TransitionMatrixP::fiss, TransitionMatrixP::iact, TransitionMatrixP::ilite, TransitionMatrixP::itot, and Origen::SUBLIB_2AC.

Referenced by TransitionMatrixP::get_reaction_power().

double get_capture_power	(	const DoubleList &	numden,
		double	vol,
		double	flux
	)

References TransitionMatrixP::b_kappa_capture, TransitionMatrixP::bounds, TransitionMatrixP::fiss, TransitionMatrixP::ilite, TransitionMatrixP::itot, Origen::SUBLIB_2AC, and TransitionMatrixP::tocap.

Referenced by TransitionMatrixP::get_reaction_power().

int add_tally_nuclide	(	const std::vector< double > &	tally_dw,
		const std::vector< int > &	tally_di,
		const std::vector< double > &	tally_rw,
		const std::vector< int > &	tally_ri
	)

inline

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::num_tallies.

Referenced by TransitionMatrixP::add_concentration_tallies(), TransitionMatrixP::add_energy_tally(), TransitionMatrixP::add_num_captures_tally(), TransitionMatrixP::add_num_fissions_tally(), and TEST().

int add_tally_nuclide	(	const std::vector< double > &	tally_dw,
		const std::vector< int > &	tally_di,
		const std::vector< double > &	tally_rw,
		const std::vector< int > &	tally_ri,
		int	zaid
	)

References TransitionMatrixP::_cached_has_valid_mts, TransitionMatrixP::a, TransitionMatrixP::dis, TransitionMatrixP::itot, TransitionMatrixP::kd, TransitionMatrixP::kd_, TransitionMatrixP::loc, TransitionMatrixP::mt, TransitionMatrixP::non, TransitionMatrixP::non0, TransitionMatrixP::non0_, TransitionMatrixP::nucl, TransitionMatrixP::num_tallies, and TransitionMatrixP::tocap.

int add_energy_tally ( double flux )

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::add_tally_nuclide(), TransitionMatrixP::b_kappa_capture, TransitionMatrixP::b_kappa_fission, TransitionMatrixP::dis, TransitionMatrixP::fiss, TransitionMatrixP::iact, TransitionMatrixP::ilite, TransitionMatrixP::itot, TransitionMatrixP::num_tallies, TransitionMatrixP::q, TransitionMatrixP::tocap, and TransitionMatrixP::typ_nuc.

Referenced by Solver_cram::solve_impl(), Solver_matrex::solve_impl(), and TEST().

int add_num_fissions_tally ( )

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::add_tally_nuclide(), TransitionMatrixP::fiss, TransitionMatrixP::iact, and TransitionMatrixP::ilite.

Referenced by Solver_cram::solve_impl(), Solver_matrex::solve_impl(), and TEST().

int add_num_captures_tally ( )

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::add_tally_nuclide(), TransitionMatrixP::itot, TransitionMatrixP::num_tallies, and TransitionMatrixP::tocap.

Referenced by Solver_cram::solve_impl(), Solver_matrex::solve_impl(), and TEST().

int add_concentration_tallies ( std::vector< int > & zaids )

Examples:: tstTransitionMatrixP.cpp.

References TransitionMatrixP::add_tally_nuclide(), TransitionMatrixP::itot, TransitionMatrixP::nucl, and TransitionMatrixP::num_tallies.

Referenced by Solver_cram::solve_impl(), Solver_matrex::solve_impl(), and TEST().

const NuclideSet& nuclide_set ( ) const

inline

References TransitionMatrixP::b_nuclide_set.

Referenced by Case::load_new_concentrations().

void init_bounds ( )

protected

Initialize library boundaries (for internal function use)

References TransitionMatrixP::bounds, TransitionMatrixP::iact, TransitionMatrixP::ifp, TransitionMatrixP::ilite, and TransitionMatrixP::itot.

Referenced by TransitionMatrixP::finish_init().

void init_typ_nuc ( )

protected

Initialize typ_nuc array on class.

References TransitionMatrixP::iact, TransitionMatrixP::ilite, TransitionMatrixP::itot, Origen::SUBLIB_1LT, Origen::SUBLIB_2AC, Origen::SUBLIB_3FP, and TransitionMatrixP::typ_nuc.

Referenced by TransitionMatrixP::finish_init().

std::string emsgn	(	const int	i,
		const std::string	v1msg,
		const V1	val1,
		const std::string	v2msg,
		const V2	val2
	)

inlineprivate

References TransitionMatrixP::toQString_sizzzaaa().

Referenced by TransitionMatrixP::check().

std::string emsgs	(	const std::string	v1msg,
		const V1	val1,
		const std::string	v2msg,
		const V2	val2
	)

inlineprivate

Referenced by TransitionMatrixP::check().

Friends And Related Function Documentation

friend class Origen::Library

friend

Member Data Documentation

int non

protected

Number of non-zero off-diagonal elements of the transition matrix A.

int ilite

protected

Number of light-element activation product nuclides in the library.

int iact

protected

Number of actinide nuclides in the library.

int ifp

protected

Number of fission product nuclides in the library.

Referenced by TransitionMatrixP::finish_init(), TransitionMatrixP::get_ifp(), TransitionMatrixP::init_bounds(), TransitionMatrixP::operator=(), TransitionMatrixP::print_info(), TransitionMatrixP::set_ifp(), and TransitionMatrixP::toQString_sizes().

int itot

protected

Total number of nuclides in the library.

int nfluxgrp

protected

Number of energy groups in the collapse spectrum.

Referenced by TransitionMatrixP::get_nfluxgrp(), TransitionMatrixP::operator=(), Library::populate_transition_matrix_reaction(), TransitionMatrixP::set_nfluxgrp(), TransitionMatrixP::set_spectrum(), and TransitionMatrixP::toQString_sizes().

int nti

protected

Number of title cards.

Referenced by TransitionMatrixP::get_nti(), TransitionMatrixP::operator=(), TransitionMatrixP::print_info(), TransitionMatrixP::set_nti(), TransitionMatrixP::set_titles(), TransitionMatrixP::toQString_info(), TransitionMatrixP::toQString_sizes(), and TransitionMatrixP::toQString_title().

int nfiso

protected

Number of fissionable isotopes.

Referenced by TransitionMatrixP::get_nfiso(), TransitionMatrixP::operator=(), TransitionMatrixP::set_nfiso(), TransitionMatrixP::set_nucfis(), and TransitionMatrixP::toQString_sizes().

float burnup

protected

Burnup [MWd/tU] of the library.

Referenced by Library::add_transition_matrix(), TransitionMatrixP::get_burnup(), TransitionMatrixP::operator=(), Library::populate_transition_matrix_reaction(), TransitionMatrixP::set_burnup(), and TransitionMatrixP::toQString_info().

std::string filename

protected

Base filename of the library.

Referenced by TransitionMatrixP::get_filename(), TransitionMatrixP::operator=(), TransitionMatrixP::print_info(), TransitionMatrixP::set_filename(), and TransitionMatrixP::toQString_info().

int pos

protected

Position number of the burnup-dependent XS set in the library.

Referenced by TransitionMatrixP::get_pos(), TransitionMatrixP::operator=(), TransitionMatrixP::print_info(), TransitionMatrixP::set_pos(), and TransitionMatrixP::toQString_info().

int numLibs

protected

Number of available burnup positions in the library.

Referenced by TransitionMatrixP::operator=().

int sizes[3]

protected

[ilite, iact, ifp] array

Referenced by TransitionMatrixP::operator=().

int bounds[4][2]

protected

ilo/ihi for each library (0=all; 1,2,3 = lite/act/fp)

Referenced by TransitionMatrixP::get_capture_power(), TransitionMatrixP::get_fission_power(), TransitionMatrixP::get_xs(), TransitionMatrixP::init_bounds(), TransitionMatrixP::operator=(), TransitionMatrixP::remove_fp_reactions(), TransitionMatrixP::set_xs(), and TransitionMatrixP::setup_fast_transition_access().

IntegerList typ_nuc

protected

Gives the nuclide type for each nuclide [1/2/3] [itot].

Referenced by TransitionMatrixP::add_energy_tally(), TransitionMatrixP::get_typ_nuc(), TransitionMatrixP::init_typ_nuc(), TransitionMatrixP::operator=(), TransitionMatrixP::remove_fp_reactions(), and TransitionMatrixP::split_id().

IntegerList nucl

protected

NUCL array (ZAID for all nuclides in the library) [itot].

IntegerList kd_

protected

Total number of parents for nuclide I by decay transitions [itot].

Referenced by TransitionMatrixP::add_tally_nuclide(), TransitionMatrixP::check(), TransitionMatrixP::cleanup_transitions_for_adjoint(), TransitionMatrixP::expand_matrix_pointers(), TransitionMatrixP::get_kd_(), TransitionMatrixP::operator=(), TransitionMatrixP::set_kd_(), and TransitionMatrixP::transpose_transition_matrix().

IntegerList non0_

protected

Total number of parents for nuclide I [itot].

Referenced by TransitionMatrixP::add_tally_nuclide(), TransitionMatrixP::check(), TransitionMatrixP::cleanup_transitions_for_adjoint(), TransitionMatrixP::expand_matrix_pointers(), TransitionMatrixP::find_daughters(), TransitionMatrixP::first_transition(), TransitionMatrixP::get_non0_(), TransitionMatrixP::operator=(), TransitionMatrixP::populate_transition_ids_cache(), TransitionMatrixP::set_non0_(), and TransitionMatrixP::transpose_transition_matrix().

IntegerList kd

protected

Pointer [NON] to last decay parent of nuclide I in A [itot].

IntegerList non0

protected

Pointer [NON] to last parent of nuclide I in A [itot].

IntegerList loc

protected

LOC array.

LOC[j] is the position in array NUCL of the parent of the transition stored in position j of the compressed transition matrix A) [non]

FloatList dis

protected

DIS array (Radioactive decay constants) [itot].

Referenced by TransitionMatrixP::add_energy_tally(), TransitionMatrixP::add_tally_nuclide(), TransitionMatrixP::build_full_matrix(), TransitionMatrixP::check(), TransitionMatrixP::cleanup_transitions_for_adjoint(), TransitionMatrixP::fold_flux(), TransitionMatrixP::get_decay_power(), TransitionMatrixP::get_dis(), TransitionMatrixP::matvec(), TransitionMatrixP::operator=(), and TransitionMatrixP::set_dis().

FloatList q

protected

Q array (Recoverable energy values from decay) [itot].

Referenced by TransitionMatrixP::add_energy_tally(), TransitionMatrixP::get_decay_power(), TransitionMatrixP::get_q(), TransitionMatrixP::operator=(), and TransitionMatrixP::set_q().

FloatList fg

protected

FG array (Fractions of Q-values due to photons) [itot].

Referenced by TransitionMatrixP::get_fg(), TransitionMatrixP::operator=(), and TransitionMatrixP::set_fg().

FloatList ampc

protected

AMPC array (RCG values for air) [itot].

Referenced by TransitionMatrixP::get_ampc(), TransitionMatrixP::operator=(), and TransitionMatrixP::set_ampc().

FloatList wmpc

protected

WMPC array (RCG values for water) [itot].

Referenced by TransitionMatrixP::get_wmpc(), TransitionMatrixP::operator=(), and TransitionMatrixP::set_wmpc().

FloatList abund

protected

ABUND array (Natural abundances of activation-product nuclide in atom%) [ilite]

Referenced by TransitionMatrixP::convert_abundances(), TransitionMatrixP::get_abund(), TransitionMatrixP::operator=(), and TransitionMatrixP::set_abund().

FloatList wabund

protected

Natural abundances of nuclides in wt% [ilite].

Referenced by TransitionMatrixP::convert_abundances(), TransitionMatrixP::get_wabund(), TransitionMatrixP::operator=(), and TransitionMatrixP::set_wabund().

IntegerList mt

protected

MT numbers for every transition (A-matrix elements) [non].

IntegerList nucfis

protected

List of fissionable nuclides [nfiso].

Referenced by TransitionMatrixP::get_nucfis(), TransitionMatrixP::operator=(), and TransitionMatrixP::set_nucfis().

FloatList spectrum

protected

Fluxes used for library collapse [nfluxgrp].

Referenced by Library::add_transition_matrix(), TransitionMatrixP::get_spectrum(), TransitionMatrixP::operator=(), Library::populate_transition_matrix_reaction(), and TransitionMatrixP::set_spectrum().

FloatList m

protected

Atomic masses in grams/mol [itot].

Referenced by TransitionMatrixP::convert_abundances(), TransitionMatrixP::finish_init(), TransitionMatrixP::get_m(), TransitionMatrixP::operator=(), TransitionMatrixP::print_transitions_for(), and TransitionMatrixP::toQString_nuclides().

StringList titles

protected

Title cards container.

Referenced by TransitionMatrixP::get_titles(), TransitionMatrixP::operator=(), TransitionMatrixP::print_info(), TransitionMatrixP::set_titles(), and TransitionMatrixP::toQString_title().

FloatList b_kappa_capture

protected

Kappa-capture values in MeV [itot] NOTE: capture = loss - fission

Referenced by TransitionMatrixP::add_energy_tally(), Library::add_transition_matrix(), TransitionMatrixP::finish_init(), TransitionMatrixP::get_capture_power(), TransitionMatrixP::get_kappa_capture(), TransitionMatrixP::operator=(), Library::populate_transition_matrix_reaction(), and TransitionMatrixP::set_kappa_capture().

FloatList b_kappa_fission

protected

Kappa-fission values in MeV [iact].

Referenced by TransitionMatrixP::add_energy_tally(), Library::add_transition_matrix(), TransitionMatrixP::finish_init(), TransitionMatrixP::get_fission_power(), TransitionMatrixP::get_kappa_fission(), TransitionMatrixP::operator=(), Library::populate_transition_matrix_reaction(), and TransitionMatrixP::set_kappa_fission().

DoubleList a

protected

A array [non].

A is the compressed transition matrix for effective one-group neutron capture transitions of the first burnup interval and for decay transitions

DoubleList tocap

protected

TOCAP array (Effective one-group capture cross-sections) [itot].

DoubleList fiss

protected

FISS array (Effective one-group fission cross-sections) [iact].

FloatList genneu

protected

GENNEU array (Effective one-group neutron yields) [ilite + act].

Referenced by Library::add_transition_matrix(), TransitionMatrixP::get_genneu(), TransitionMatrixP::operator=(), Library::populate_transition_matrix_reaction(), and TransitionMatrixP::set_genneu().

int nmonth

protected

Month the library was made.

Referenced by TransitionMatrixP::get_nmonth(), TransitionMatrixP::operator=(), TransitionMatrixP::print_info(), and TransitionMatrixP::set_nmonth().

int nday

protected

Day the library was made.

Referenced by TransitionMatrixP::get_nday(), TransitionMatrixP::operator=(), TransitionMatrixP::print_info(), and TransitionMatrixP::set_nday().

int nyear

protected

Year the library was made.

Referenced by TransitionMatrixP::get_nyear(), TransitionMatrixP::operator=(), TransitionMatrixP::print_info(), and TransitionMatrixP::set_nyear().

bool _cached_has_valid_mts

mutableprotected

whether the library has valid MTs or not (used internally for checking)

Referenced by TransitionMatrixP::add_tally_nuclide(), and TransitionMatrixP::has_valid_mts().

std::map<int, std::vector<int> > d_transition_ids_cache

protected

Referenced by TransitionMatrixP::clear_transition_ids_cache(), TransitionMatrixP::get_possible_transition_ids(), TransitionMatrixP::get_transition_ids(), and TransitionMatrixP::populate_transition_ids_cache().

std::set<int> d_possible_transition_ids_cache

protected

Referenced by TransitionMatrixP::clear_transition_ids_cache(), TransitionMatrixP::get_possible_transition_ids(), and TransitionMatrixP::populate_transition_ids_cache().

int num_tallies

protected

Number of tally nuclides added to the system.

Referenced by TransitionMatrixP::add_concentration_tallies(), TransitionMatrixP::add_energy_tally(), TransitionMatrixP::add_num_captures_tally(), and TransitionMatrixP::add_tally_nuclide().

SCP_NuclideSet b_nuclide_set

protected

nuclide set for the future

Referenced by TransitionMatrixP::find_nuclide(), TransitionMatrixP::find_nuclide_all(), TransitionMatrixP::find_nuclide_guess(), TransitionMatrixP::nuclide_set(), and TransitionMatrixP::operator=().

The documentation for this class was generated from the following files:

Core/dc/TransitionMatrixP.h
Core/dc/TransitionMatrixP.cpp

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