Namespaces
	detail

	test

Classes
class	Alpha

class	AlphaField
	fundamental particle field class: alpha field More...

class	AlphaSpectra
	Container for alpha spectrum data. More...

class	BetaSpectra
	Container for beta spectrum data. More...

class	Case

class	Channel
	Defines the channel interface for the TransitionSystem. More...

class	Channel_Gen
	General-purpose implementation of the Channel interface. More...

class	ChannelType
	Defines the channel type interface for the TransitionSystem. More...

class	ChannelType_Decay
	Channel type for decay. More...

class	ChannelType_Fiss
	Channel type for fission. More...

class	ChannelType_Reac
	Channel type for (non-fission) reactions. More...

class	Checkable

struct	CompContainer
	Struct to store compositions (always as number fractions) More...

class	CompManager
	Class for mixing up sweet materials. More...

class	ConcentrationConverter

class	Concentrations
	Container for Concentrations data. More...

class	DecayChannel

class	DecayData

class	DecayParent

class	DecayResource

class	DecayResourceIO

class	DecayResourceIO_cimg

class	Deuteron

class	DeuteronField
	fundamental particle field class: deuteron field More...

class	Diff
	simple interface for differs More...

class	DiscreteSpectrum
	defines a set of lines (energy points and intensities) More...

class	Electron

class	ElectronField
	fundamental particle field class: electron field More...

class	EmissionResource

class	EmissionSpectrum
	defines a continuous + discrete line spectra for a single nuclide More...

struct	Energy

class	EnergyResource
	Computes kappa values for fission/capture based on izzzaaa lookup. More...

class	FakeFactory

class	Field
	Defines the field interface for the TransitionSystem. More...

class	Field_Gen
	General-purpose implementation of the Field interface. More...

class	GammaResource

class	GammaResourceIO

class	GammaResourceIO_cimg

class	GammaSpectra
	Container for gamma spectrum data. More...

class	GridData_TransitionCoeff
	Creates a GridData object for TransitionCoeff-based responses, used to interpolate TransitionCoeff objects. More...

class	GridView
	GridView provides a template for creating "views" of date usable with GridData to perform interpolation and "permute" interpolated types. More...

class	GridView_State

class	GridView_StateInfo

class	GridView_TransitionCoeff
	Viewer for interpolating TransitionCoeff data using GridData. More...

class	Helion

class	HelionField
	fundamental particle field class: helion field More...

class	History

struct	implicitTag

struct	LexicalOrderIZZZAAA
	sorting function More...

class	Library

class	LibraryBuilder

class	LibraryHeader

class	LibraryIO

class	LibraryIO_bof

class	LibraryIO_s61

class	LibraryIO_s62b

class	LibraryType

class	LocalDiff

class	Material
	Container for an ORIGEN depletable material. More...

class	MaterialMap
	Simple map of materials id->Origen::Material. More...

class	MultiZoneDepleter
	Performs one step of irradiation (potentially many substeps) for many materials, with a fixed transition matrix which resides on each material. More...

class	Neutrino

class	NeutrinoField
	fundamental particle field class: neutrino field More...

class	Neutron

class	NeutronField
	fundamental particle field class: neutron field More...

class	NeutronSpectra
	Container for gamma spectrum data. More...

class	Nuclide
	Defines the nuclide interface for the TransitionSystem. More...

class	Nuclide_Gen
	General-purpose implementation of the Nuclide interface. More...

class	NuclideGroupFilter

class	NuclideResource

class	NuclideResourceIO

class	NuclideResourceIO_json

class	NuclideResourceIO_sclib

class	NuclideSet

class	Null

class	NullField
	fundamental particle field class: null field (for decay) More...

class	Obiwan_convert
	execute obiwan in convert mode More...

class	Obiwan_diff
	execute obiwan in diff mode More...

class	Obiwan_info
	execute obiwan in info mode More...

class	Obiwan_interp
	execute obiwan in interp mode More...

class	Obiwan_patch
	execute obiwan in patch mode More...

class	Obiwan_tag
	execute obiwan in tag mode More...

class	Obiwan_view
	execute obiwan in view mode More...

class	Positron

class	PositronField
	fundamental particle field class: positron field More...

struct	Power

class	Proton

class	ProtonField
	fundamental particle field class: proton field More...

class	Quantity

class	ReactionResource
	Multi-group cross section/yields resource. More...

class	ReactionResourceIO

class	ReactionResourceIO_ampx

class	Removal
	Stores removal constants. More...

class	Solver
	Interface satisfied ORIGEN single step depletion/decay solver. More...

class	Solver_cram
	CRAM depletion solver class satisfying Origen::solver. More...

class	Solver_Fake
	A fake solver satisfying the Origen::Solver interface. More...

class	Solver_matrex
	MATREX solver class satisfying Origen::solver. More...

class	SolverSelector
	Class for getting the selected solver. More...

class	Species
	Defines the species interface for the TransitionSystem. More...

class	Species_Gen
	General-purpose implementation of the Species interface. More...

class	Spectrum
	Container for spectrum data. More...

struct	STab1
	a simplified Tab1 container More...

class	STab1Reader
	simplified Tab1 reader More...

class	STab1Writer
	simplified Tab1 writeer More...

class	State
	Container for state data. More...

class	StateInfo
	Container for a State information tag. More...

class	StateSet

class	StateSetIO

class	StateSetIO_bof

class	StateSetIO_s61

class	StateSetIO_s62b

class	TagManager
	TagManager class definition. More...

struct	Time

class	Transition
	Defines the transition interface for the TransitionSystem. More...

class	Transition_Gen

class	Transition_GenByp

class	TransitionCoeff
	Container for transition coefficient data. More...

class	TransitionGroupFilter

class	TransitionMatrixP

class	TransitionMatrixUpdater

class	TransitionStructure
	Container for transition structure data. More...

class	TransitionSystem
	Defines the interface TransitionSystem. More...

class	TransitionSystem_Gen
	General-purpose implementation of the TransitionSystem interface. More...

class	TransitionSystemAdapter_AmpxN

class	TransitionSystemAdapter_DecayResource

class	TransitionSystemAdapter_TransitionMatrix

class	Triton

class	TritonField
	fundamental particle field class: triton field More...

struct	Unitless

class	YieldData

class	YieldParent

class	YieldResource

class	YieldResourceIO

class	YieldResourceIO_ampx

class	YieldResourceIO_stab1

Typedefs
typedef AlphaSpectra::SP	SP_AlphaSpectra

typedef AlphaSpectra::SCP	SCP_AlphaSpectra

typedef BetaSpectra::SP	SP_BetaSpectra

typedef BetaSpectra::SCP	SCP_BetaSpectra

typedef Concentrations::SP	SP_Concentrations

typedef Concentrations::SCP	SCP_Concentrations

typedef DecayData::SP	SP_DecayData

typedef DecayData::SCP	SCP_DecayData

typedef std::vector< double >	Vec_Dbl

typedef Vec_Dbl	EnergyBounds

typedef std::pair< double, double >	Line

typedef std::set< Line, std::greater< Line > >	Set_Line

typedef EmissionSpectrum::SP	SP_Emission

typedef EmissionSpectrum::SCP	SCP_Emission

typedef GammaSpectra::SP	SP_GammaSpectra

typedef GammaSpectra::SCP	SCP_GammaSpectra

typedef GridView_TransitionCoeff::SP	SP_GridView_TransitionCoeff

typedef Quantity< Unitless >	U

typedef Library::SP	SP_Library

typedef Library::SCP	SCP_Library

typedef LibraryHeader::SP	SP_LibraryHeader

typedef LibraryHeader::SCP	SCP_LibraryHeader

typedef std::shared_ptr< DoubleList >	SP_DoubleList

typedef Origen::TransitionMatrixP	TrMatrix

typedef std::shared_ptr< TrMatrix >	SP_TrMatrix

typedef std::deque< SP_TrMatrix >	Deq_TrMatrix

typedef std::deque< SP_DoubleList >	Deq_Amt

typedef std::deque< Removal::SP >	Deq_Removal

typedef std::shared_ptr< MaterialBuffer >	SP_MaterialBuffer

typedef std::shared_ptr< Material >	SP_Material

typedef std::shared_ptr< MaterialMap >	SP_MaterialMap

typedef NeutronSpectra::SP	SP_NeutronSpectra

typedef NeutronSpectra::SCP	SCP_NeutronSpectra

typedef NuclideSet::SP	SP_NuclideSet

typedef NuclideSet::SCP	SCP_NuclideSet

typedef Spectrum::SP	SP_Spectrum

typedef Spectrum::SCP	SCP_Spectrum

typedef State::SP	SP_State

typedef State::SCP	SCP_State

typedef StateInfo::SP	SP_StateInfo

typedef StateInfo::SCP	SCP_StateInfo

typedef std::pair< double, double >	Pair_TB

typedef std::pair< Pair_TB, SCP_NeutronSpectra >	Pair_NSpectra

typedef std::pair< Pair_TB, SCP_AlphaSpectra >	Pair_ASpectra

typedef std::pair< Pair_TB, SCP_BetaSpectra >	Pair_BSpectra

typedef std::pair< Pair_TB, SCP_GammaSpectra >	Pair_GSpectra

typedef std::pair< Pair_TB, SCP_Concentrations >	Pair_Concs

typedef std::vector< Pair_NSpectra >	Vec_Pair_NSpectra

typedef std::vector< Pair_ASpectra >	Vec_Pair_ASpectra

typedef std::vector< Pair_BSpectra >	Vec_Pair_BSpectra

typedef std::vector< Pair_GSpectra >	Vec_Pair_GSpectra

typedef std::vector< Pair_Concs >	Vec_Pair_Concs

typedef std::vector< SP_State >	Vec_SP_State

typedef std::shared_ptr< Vec_SP_State >	SP_Vec_SP_State

typedef StateSet::SP	SP_StateSet

typedef StateSet::SCP	SCP_StateSet

typedef TagManager::SP	SP_TagManager

typedef TagManager::SCP	SCP_TagManager

typedef TransitionCoeff::SP	SP_TransitionCoeff

typedef TransitionCoeff::SCP	SCP_TransitionCoeff

typedef TransitionMatrixP::SP	SP_TransitionMatrixP

typedef TransitionMatrixP::SCP	SCP_TransitionMatrixP

typedef TransitionStructure::SP	SP_TransitionStructure

typedef TransitionStructure::SCP	SCP_TransitionStructure

typedef std::vector< std::string >	Vec_Str

typedef std::vector< int >	Vec_Int

typedef std::vector< float >	Vec_Flt

typedef std::vector< size_t >	Vec_Sze

typedef std::vector< bool >	Vec_Bool

typedef std::deque< double >	Deq_Dbl

typedef std::vector< Vec_Dbl >	Vec_Vec_Dbl

typedef std::shared_ptr< Vec_Int >	SP_Vec_Int

typedef std::shared_ptr< Vec_Dbl >	SP_Vec_Dbl

typedef std::shared_ptr< Vec_Flt >	SP_Vec_Flt

typedef std::shared_ptr< const Vec_Int >	SCP_Vec_Int

typedef std::shared_ptr< const Vec_Dbl >	SCP_Vec_Dbl

typedef std::shared_ptr< const Vec_Flt >	SCP_Vec_Flt

typedef unsigned short int	FieldId

typedef int	NuclideId

typedef int	SpeciesId

typedef int	ByproductId

typedef std::pair< FieldId, int >	ChannelTypeId_t

typedef std::map< int, size_t >	IdMap

typedef std::shared_ptr< IdMap >	SP_IdMap

typedef std::shared_ptr< const IdMap >	SCP_IdMap

typedef std::pair< double, double >	EnergyRange_t

typedef std::shared_ptr< Diff >	SP_Diff

typedef std::shared_ptr< STab1 >	SP_STab1
	smart pointer More...

typedef DecayResource::SP	SP_DecayResource

typedef DecayResource::SCP	SCP_DecayResource

typedef EmissionResource::SP	SP_EmissionResource

typedef EmissionResource::SCP	SCP_EmissionResource

typedef GammaResource::SP	SP_GammaResource

typedef GammaResource::SCP	SCP_GammaResource

typedef NuclideResource::SP	SP_NuclideResource

typedef NuclideResource::SCP	SCP_NuclideResource

typedef ReactionResource::SP	SP_ReactionResource

typedef ReactionResource::SCP	SCP_ReactionResource

typedef std::map< int, int >	FPMap_t

typedef std::map< int, int >	ParentMap_t

typedef std::shared_ptr< YieldResource >	SP_YieldResource

typedef TransitionSystem::SP	SP_TransitionSystem

typedef std::shared_ptr< Species >	SP_Species

typedef std::shared_ptr< Field >	SP_Field

typedef std::shared_ptr< ChannelType >	SP_ChannelType

typedef std::shared_ptr< Channel >	SP_Channel

typedef std::shared_ptr< Nuclide >	SP_Nuclide

typedef std::shared_ptr< Transition >	SP_Transition

typedef Species *	WP_Species

typedef Field *	WP_Field

typedef ChannelType *	WP_ChannelType

typedef Channel *	WP_Channel

typedef Nuclide *	WP_Nuclide

typedef Transition *	WP_Transition

typedef TransitionSystem *	WP_TransitionSystem

typedef const Species *	CWP_Species

typedef const Field *	CWP_Field

typedef const ChannelType *	CWP_ChannelType

typedef const Channel *	CWP_Channel

typedef const Nuclide *	CWP_Nuclide

typedef const Transition *	CWP_Transition

typedef const TransitionSystem *	CWP_TransitionSystem

typedef std::map< ByproductId, int >	ByproductCount_t

typedef std::shared_ptr< CompManager >	SP_CompManager

typedef std::shared_ptr< MultiZoneDepleter >	SP_MultiZoneDepleter

typedef std::shared_ptr< Solver >	SP_Solver

typedef std::shared_ptr< const Solver >	SCP_Solver

typedef std::shared_ptr< Solver_Fake >	SP_Solver_Fake

typedef std::vector< Transition::WP >	Vec_Trans

typedef ScaleData::MGFluxMapper< float >	MGFluxMapper

typedef std::shared_ptr< MGFluxMapper >	SP_MGFluxMapper

typedef std::shared_ptr< SolverSelector >	SP_SolverSelector

typedef std::shared_ptr< const SolverSelector >	SCP_SolverSelector

Enumerations
enum	ConcentrationUnit { NOT_GIVEN = -1, GATOMS = 0, ATOMS_B_CM = 1, GRAMS = 2, CURIES = 3, ABSORPTIONS = 4, CAPTURES = 5, FISSIONS = 6, AIRM_3 = 7, APELEM = 8, BECQUERELS = 9, GAMWATTS = 10, GAMMEVS = 11, GPERCM_3 = 12, H2OM_3 = 13, KILOGRAMS = 14, WPELEM = 15, WATTS = 16, MEVS = 17, PARTICLES_SEC = 18, PARTICLES_SEC_MEV = 19, ENERGY_SEC_MEV = 20, MOLES = 21, CM_2_BARN = 22, WPPM = 23, APPM = 24, LAST_CONCENTRATION_UNIT }

enum	Representation { CONSTANT = 0, LINEAR = 1 }

enum	YieldType { YIELD_UNKNOWN = 0, YIELD_SIMPLE = 1, YIELD_ISOMERIC = 2, YIELD_DISTRIBUTED = 3, YIELD_MISSING = 4 }

Functions
string	convertConcUnitToPrettyString (ConcentrationUnit unit)

string	convertConcUnitToString (ConcentrationUnit unit)

ConcentrationUnit	convertStringToConcUnit (const string &value)

int	unitAsInt (const ConcentrationUnit &unit)

ConcentrationUnit	intAsUnit (const int &unit)

bool	isMassUnit (ConcentrationUnit unit)

bool	isNumberUnit (ConcentrationUnit unit)

bool	isDecayUnit (ConcentrationUnit unit)

bool	isSpectrumUnit (ConcentrationUnit unit)

bool	isReactionUnit (ConcentrationUnit unit)

bool	isVolumetric (ConcentrationUnit unit)

bool	needsVolumeToConvert (ConcentrationUnit unita, ConcentrationUnit unitb)

template<>
double	Energy::base< Energy::JOULE > ()

template<>
double	Energy::base< Energy::EV > ()

template<>
double	Energy::base< Energy::KWH > ()

template<>
double	Energy::base< Energy::MWD > ()

template<>
double	Energy::base< Energy::GWD > ()

template<>
double	Energy::base< Energy::GWYR > ()

template<>
std::string	Energy::name< Energy::JOULE > ()

template<>
std::string	Energy::name< Energy::EV > ()

template<>
std::string	Energy::name< Energy::KWH > ()

template<>
std::string	Energy::name< Energy::MWD > ()

template<>
std::string	Energy::name< Energy::GWD > ()

template<>
std::string	Energy::name< Energy::GWYR > ()

Vec_Int	create_zzzaaai_seq1 (size_t total_nuclides)

NuclideSet	createNuclideSet_random1 ()

Vec_Int	createNuclideIds5 ()

Vec_Int	createNuclideIds6 ()

DecayData	createDecayData_random1 (const LibraryHeader &def)

TransitionStructure	createTransitionStructure_random1 (const LibraryHeader &def)

TransitionCoeff	createTransitionCoeff_random1 (const LibraryHeader &def)

template<>
double	Unitless::base< Unitless::ONE > ()

template<>
std::string	Unitless::name< Unitless::ONE > ()

double	integrate_history (const Vec_Dbl &scaling, const Material::History_t &hist)

std::string	h2string (const Material::History_t &hist)

template<>
double	Power::base< Power::WATT > ()

template<>
std::string	Power::name< Power::WATT > ()

void	SerialRegistrar (Standard::SerialFactory *factory)
	Registrar for serializable objects. More...

std::vector< implicitTag >	checkImplicitTags (const std::vector< TagManager > &tagManList, const TagManager &tm)
	Function to check the tag managers from a set of TagManagers (e.g., from a set of Library objects) to enssure that they have all of the tags requested in a reference TagManager. Then checks to see if the libraries have any other interpolable tags. If so, these are collected along with all of the values for that tag on all of the TagManagers and returned. More...

void	addImpliedTags (const std::vector< implicitTag > &tagSpans, TagManager tm, Vec_Str dimNames)
	Function to add unspecified interpolable tags to a reference tag manager with the average value of that tag over all libraries provided. More...

std::string	parseTags (const std::string &str, Vec_Str tags, Vec_Str values, Vec_Bool *modify)

template<>
double	Time::base< Time::SECONDS > ()

template<>
double	Time::base< Time::MINUTES > ()

template<>
double	Time::base< Time::HOURS > ()

template<>
double	Time::base< Time::DAYS > ()

template<>
double	Time::base< Time::YEARS > ()

template<>
std::string	Time::name< Time::SECONDS > ()

template<>
std::string	Time::name< Time::MINUTES > ()

template<>
std::string	Time::name< Time::HOURS > ()

template<>
std::string	Time::name< Time::DAYS > ()

template<>
std::string	Time::name< Time::YEARS > ()

bool	nuclide_in_bounds (const int n, const int ntotal)

bool	only_set_component (const int mt_in)

void	toQString_tinds_2d (const IntegerList &nind_list, const IntegerList &transition_ids, const Integer2dList &tinds_2d)

void	read (const bof::BOFObject &obj, TagManager &tag_manager)
	read a tag manager from a bof object More...

void	read (const bof::BOFObject &obj, std::string name, TagManager &tag_manager)
	read a tag manager from a bof object More...

void	write (bof::BOFObject &obj, std::string name, const TagManager &tag_manager)
	write a tag manager to a bof object More...

void	write (bof::BOFObject &obj, const TagManager &tag_manager)
	write a tag manager to a bof object More...

void	read (const bof::BOFObject &obj, std::string name, StateInfo &states_info)
	read state info from a bof object More...

void	read (const bof::BOFObject &obj, StateInfo &states_info)
	read state info from a bof object More...

void	write (bof::BOFObject &obj, std::string name, const StateInfo &states_info)
	write state info to a bof object More...

void	write (bof::BOFObject &obj, const StateInfo &states_info)
	write state info to a bof object More...

SP_Diff	diffLibrary (const Library &a, const Library &b, int pos, double reltol)

std::string	diffConcentrations (const Concentrations &a, const Concentrations &b, double reltol)

template<typename T >
std::string	diffLine (const std::string &head, const T &val1, const T &val2, float tol=1.0e-5)

template<typename T >
std::string	diffHalfLine (const std::string &head, const T &val, const int &side)

void	graphvizLibrary (const Library &lib, int pos, std::ostream &os)

void	graphvizLibrary (const Library &lib, int pos, const std::vector< double > *numden, const NuclideGroupFilter &nfilter, const TransitionGroupFilter &tfilter, bool include_byproducts, std::ostream &os)

SP_Library	interpLibraryND (const std::vector< TagManager > &tagManList, const TagManager &tm)

SP_Library	interpLibraryND (const std::vector< SCP_Library > &, const TagManager &)
	on-disk More...

std::vector< TagManager >	selectLibraries (const std::vector< TagManager > &tmList, const TagManager &tmRef)
	Function to take a wide selection of Origen Libraries in memory and only return those that have the ID and Interp tags requested in the provided TagManager. Then checks to make sure the ID tag values match. More...

std::vector< SCP_Library >	selectLibraries (const std::vector< SCP_Library > &libList, const TagManager &tmRef)
	Function to take a wide selection of Origen Libraries in memory and only return those that have the ID and Interp tags requested in the provided TagManager. Then checks to make sure the ID tag values match. More...

std::vector< SP_TagManager >	collectLibraries (const std::vector< std::string > &lib_names)
	Function that accepts names of Origen library files on disk which can be full paths if necessary. More...

std::vector< SP_TagManager >	collectLibrariesParallel (const std::vector< std::string > &lib_names)
	Function that accepts names of Origen library files on disk which can be full paths if necessary. More...

bool	setbuLibrary (Library &obj, ScaleUtils::IO::DB &opts)

bool	thinLibrary (Library &obj, ScaleUtils::IO::DB &opts)

bool	convertLibrary (Library &obj, const std::string &path, ScaleUtils::IO::DB &opts)

bool	convertStateSet (StateSet &obj, const std::string &path, ScaleUtils::IO::DB &opts)

void *	loadMulti (const std::string &path, ScaleUtils::IO::DB &opts)

void	saveStateSet (const MaterialMap &matmap, const std::string &path, ScaleUtils::IO::DB opts)
	saves all isotopics in a MaterialMap to an FT71 (StateSet) More...

void	saveStateSet (size_t pstart, size_t pend, const MaterialMap &matmap, const std::string &path, ScaleUtils::IO::DB opts)

void	saveLibraries (size_t pstart, size_t pend, const MaterialMap &matmap, const std::string &pathfmt, ScaleUtils::IO::DB opts)

void	setAppVersionWrite (bof::BOFWriter &writer, ScaleUtils::IO::DB &opts, const std::string &name)

std::string	stringifySublib (int sublib)

std::string	stringifyNuclide (int id, std::string idform)
	idform can include various symbols to be substituted More...

void	populateLossXsValues (DoubleList times, DoubleList responseValues, const Library &obj, const int nind)

void	populateNuclideResource_StdComp (NuclideResource *nr, const ScaleData::StdComp &stdcomp)
	populate a nuclide resource (in place) from a ScaleData::StdComp object More...

std::map< int, double >	construct_neutron_yields_map (const Library &x, int pos)

std::map< int, double >	construct_neutron_prod_map (const Library &x, int pos)

std::map< std::pair< int, int >, double >	construct_coeff_map (const Library &x, int pos)

void	populateLibraryToxicity_DecayResource (Library *lib, const DecayResource &dr)
	populate a library with toxicity factors from a decay resource More...

void	populateLibraryAbundance (Library *lib, const ScaleUtils::IO::DB &opts)
	populate a library with abundances from a nuclide resource More...

void	populateLibraryAbundance_NuclideResource (Library *lib, const NuclideResource &nr)
	populate a library with abundances from a nuclide resource More...

void	populateLibraryMass_NuclideResource (Library *lib, const NuclideResource &nr)
	populate a library with mass from a nuclide resource More...

void	populateLibraryDecayEnergy_DecayResource (Library *lib, const DecayResource &dr)
	populate decay energy More...

void	populateCurrentTimes (int year, int month, int *day)

void	populateLibraryHeader_YieldResource (LibraryHeader lh, const Vec_Int &sizzzaaa_list, const YieldResource &yr, Vec_Int fissionable_ids)

void	populateFissionables (Vec_Int *fissionable_ids, const Vec_Int &sizzzaaa_list, const Vec_Int &transition_ids, const Vec_Int &parent_positions)

void	populateMass_ids (std::vector< float > *masses, const std::vector< int > &sizzzaaa_list)
	grabs the masses to use for each nuclide (mass number, A) More...

template<typename DirectYields_t >
std::map< int, CrossSection1d * >	collect_direct_yields (int izzzaaa, LibraryNuclide *ampx_nuclide, const DirectYields_t &direct_yields)

void	populateReactionResource_AmpxLibrary (ReactionResource *rr, const AmpxLibrary &ampx)

void	populateEnergyBounds_AmpxLibrary (Vec_Flt *bounds, const AmpxLibrary &ampx)

void	populateVec_CrossSection1d (Vec_Flt *vec, const CrossSection1d &xs1d)

void	populateFlux_AmpxLibrary (Vec_Flt *flux, const AmpxLibrary &ampx, int mix_id, int flux_nuclide_id, int flux_mt)

void	populateLibraryMass (Library *lib, const ScaleUtils::IO::DB &opts)

void	populateObiwan_dataType (ScaleUtils::IO::DB *base, const std::string &type)

void	populateXs_CrossSection1d (Vec_Flt *xs, const CrossSection1d &xs1d)

void	printReactionTransitions (const LibraryHeader &lh, const TransitionStructure &tm, bool output_zeros, const std::string &idform, std::ostream &stream)
	prints reaction transitions on a library More...

void	printReactionTransitions (const Library &lib, bool output_zeros, const std::string &idform, std::ostream &stream)
	prints reaction transitions on a library More...

void	printDecayTable (const DecayResource &dr, std::ostream &stream)
	prints all decay info on the library More...

void	printInterpolatedYields (const YieldResource &yr, const int id, const double energy, const int interp, std::ostream &stream)

void	printYields (const YieldResource &yr, std::ostream &os)

void	printYieldEnergies (const YieldResource &yr, std::ostream &os)

void	printIdTags_json (const Library &lib, std::ostream &os)

void	printInterpTags_json (const Library &lib, std::ostream &os)

void	printTags_json (const Library &lib, const std::string &file, std::ostream &os)

void	printTable (bool transpose, Table2D *table, std::ostream &os)

void	printNuclideInfo (const Library &lib, int sizzzaaa, bool transpose, const std::string &idform, int prec, std::ostream &os)

void	printBurnups (const Library &lib, bool transpose, int prec, std::ostream &os)

void	printFissionXs (const Library &lib, int sizzzaaa, bool transpose, const std::string &idform, int prec, int pos, std::ostream &os)

void	printLossXs (const Library &lib, int sizzzaaa, bool transpose, const std::string &idform, int prec, int pos, std::ostream &os)

void	printTransitionCoeff (const Library &lib, int sizzzaaa, int tid, bool transpose, bool output_zeros, double flux, bool output_transition_ids, const std::string &idform, int prec, int pos, std::ostream &os)

void	printConcentrations_csv (const StateSet &f71, ConcentrationUnit concUnit, SP_Library library, const std::string &idform, std::ostream &os)

std::string	createContentString (const State &state)

void	printStateInfo (const StateSet &state_set, int start_position, std::ostream &os)
	prints information describing the state_set More...

void	printTags_json (const StateSet &state_set, std::ostream &os)
	prints information describing the state_set More...

void	printNeutronProductionRatio (const Library &x, int pos, std::ostream &os)

void	printNeutronYields (const Library &x, int pos, std::ostream &os)

void	printTimingReport (std::ostream &os)

void	printTransitionSystemXs (const TransitionSystem &ts, std::ostream &os)

void	printEnergyResource (const EnergyResource &re, std::ostream &os)

void	printConcentrations_csv (const StateSet &f71, ConcentrationUnit concUnit, std::shared_ptr< Library > library=nullptr, const std::string &idform="$S$I$ZZZ$AAA", std::ostream &os=std::cout)

template<typename T >
void	printLine_csv (std::string id, const std::vector< T > &vals, std::ostream &os=std::cout)

template<typename T >
void	printList (const char name, T list, std::ostream &os=std::cout)

void	printTable (bool transpose, ScaleUtils::IO::Table2D *table, std::ostream &os=std::cout)

void	tabulateNuclideLabel (const Vec_Int &ids, int sizzzaaa, const std::string &idform, const std::string &units_row, Table2D *table)

void	tabulateInitialNuclideColumns (const Vec_Int &ids, ScaleUtils::IO::Table2D *table)

std::vector< const TransitionCoeff * >	getTransitionCoeffList (const Library &lib)

void	getPosRange (size_t max_size, int pos, size_t &first_index, size_t &last_index)

void	tabulateNuclideInfo (const Library &lib, int sizzzaaa, const std::string &idform, int prec, Table2D *table)

void	tabulateFissionXs (const Library &lib, int sizzzaaa, const std::string &idform, int prec, int pos, Table2D *table)

void	tabulateLossXs (const Library &lib, int sizzzaaa, const std::string &idform, int prec, int pos, const std::string &column_name, bool append_column, Table2D *table)

void	tabulateLossXs (const LibraryHeader &lh, const std::vector< const TransitionCoeff * > &tcoeff_list, int sizzzaaa, const std::string &idform, int prec, int pos, const std::string &column_name, bool append_column, Table2D *table)

void	tabulateReactionTransitions (const LibraryHeader &lh, const TransitionStructure &tm, bool output_zeros, const std::string &idform, Table2D *table)

void	tabulateTransitionCoeff (const LibraryHeader &lh, const TransitionStructure &tm, const std::vector< const TransitionCoeff * > &tcoeff_list, int sizzzaaa, int tid, bool output_zeros, double flux, bool output_transition_ids, const std::string &idform, int prec, int pos, Table2D *table)

void	tabulateTransitionCoeff (const Library &lib, int sizzzaaa, int tid, bool output_zeros, double flux, bool output_transition_ids, const std::string &idform, int prec, int pos, Table2D *table)

void	tabulateBurnups (const Library &lib, int prec, Table2D *table)

void	tabulateMaterialIsotopics (const Material &mat, size_t point, ScaleUtils::IO::Table2D *table, SCP_Vec_Int &base_ids)

void	tabulateMaterialTransitionRates (const Material &mat, size_t step, ScaleUtils::IO::Table2D *table, SCP_TransitionStructure &base_tstruct)

void	tabulateMaterialLoss (const Material &mat, size_t step, ScaleUtils::IO::Table2D *table, bool &append, int type)

void	tabulateMaterialLossXs (const Material &mat, size_t step, ScaleUtils::IO::Table2D *table, bool &append)

void	tabulateMaterialLossRate (const Material &mat, size_t step, ScaleUtils::IO::Table2D *table, bool &append)

void	tabulateMaterialDecayConstant (const Material &mat, size_t step, ScaleUtils::IO::Table2D *table, bool &append)

void	tabulateMaterialFission (const Material &mat, size_t step, ScaleUtils::IO::Table2D *table, bool &append, int type)

void	tabulateMaterialFissionXs (const Material &mat, size_t step, ScaleUtils::IO::Table2D *table, bool &append)

void	tabulateMaterialFissionRate (const Material &mat, size_t step, ScaleUtils::IO::Table2D *table, bool &append)

void	tabulateNuclideLabel (const LibraryHeader &lh, int sizzzaaa, const std::string &idform, const std::string &units_row, ScaleUtils::IO::Table2D *table)

void	tabulateNuclideInfo (const Library &lib, int sizzzaaa, const std::string &idform, int prec, ScaleUtils::IO::Table2D *table)

void	tabulateFissionXs (const Library &lib, int sizzzaaa, const std::string &idform, int prec, int pos, ScaleUtils::IO::Table2D *table)

void	tabulateLossXs (const Library &lib, int sizzzaaa, const std::string &idform, int prec, int pos, const std::string &column_name, bool append_column, ScaleUtils::IO::Table2D *table)

void	tabulateLossXs (const LibraryHeader &lh, const std::vector< const TransitionCoeff * > &tcoeff_list, int sizzzaaa, const std::string &idform, int prec, int pos, const std::string &column_name, bool append_column, ScaleUtils::IO::Table2D *table)

void	tabulateTransitionCoeff (const Library &lib, int sizzzaaa, int tid, bool output_zeros, double flux, bool transition_ids, const std::string &idform, int prec, int pos, ScaleUtils::IO::Table2D *table)

void	tabulateTransitionCoeff (const LibraryHeader &lh, const TransitionStructure &tm, const std::vector< const TransitionCoeff * > &tcoeff_list, int sizzzaaa, int tid, bool output_zeros, double flux, bool transition_ids, const std::string &idform, int prec, int pos, ScaleUtils::IO::Table2D *table)

void	tabulateBurnups (const Library &lib, int prec, ScaleUtils::IO::Table2D *table)

void	tabulateReactionTransitions (const LibraryHeader &lh, const TransitionStructure &tm, bool output_zeros, const std::string &idform, ScaleUtils::IO::Table2D *table)

DecayResource *	loadDecayResource (const Str path, ScaleUtils::IO::DB opts)

bool	saveDecayResource (const DecayResource &obj, const Str path, ScaleUtils::IO::DB opts)

GammaResource *	loadGammaResource (const Str path, ScaleUtils::IO::DB opts)

bool	saveGammaResource (const GammaResource &obj, const Str path, ScaleUtils::IO::DB opts)

double	guess_last_bin_energy (size_t nc, Vec_Dbl &e, size_t next)

Library *	loadLibrary (const Str path, ScaleUtils::IO::DB opts)

bool	saveLibrary (const Library &obj, const Str path, ScaleUtils::IO::DB opts)

char	endian_selector (const std::string &end)

NuclideResource *	loadNuclideResource (const Str path, ScaleUtils::IO::DB opts)

bool	saveNuclideResource (const NuclideResource &obj, const Str path, ScaleUtils::IO::DB opts)

ReactionResource *	loadReactionResource (const Str path, ScaleUtils::IO::DB opts)

bool	saveReactionResource (const ReactionResource &obj, const Str path, ScaleUtils::IO::DB opts)

StateSet *	loadStateSet (const Str path, ScaleUtils::IO::DB opts)

bool	saveStateSet (const StateSet &obj, const Str path, ScaleUtils::IO::DB opts)

YieldResource *	loadYieldResource (const Str path, ScaleUtils::IO::DB opts)

bool	saveYieldResource (const YieldResource &obj, const Str path, ScaleUtils::IO::DB opts)

std::string	_to_id_string (int id)

void	defaultNuclideResource (Origen::NuclideResource *nr)
	add default contents to a nuclide resource More...

void	get_default_kappas (const std::vector< int > &sizzzaaa_list, std::vector< float > &kappa_capture, std::vector< float > &kappa_fission)

bool	id_matches (SP_Transition transition, int product_id)

std::string	yield_type_name (const YieldType yt)

ScaleUtils::IO::DB	baseOptions (Standard::CommandLine &cmd)

int	info (const StateSet &state_set, ScaleUtils::IO::DB opts, std::ostream &out, std::ostream &err)

int	info (const Library &lib, ScaleUtils::IO::DB opts, std::ostream &out, std::ostream &err)

int	info (const DecayResource &dr, ScaleUtils::IO::DB opts, std::ostream &out, std::ostream &err)

int	info (const YieldResource &yr, ScaleUtils::IO::DB opts, std::ostream &out, std::ostream &err)

static ScaleUtils::IO::DB	baseOptions ()

std::string	splash ()

std::string	random_line (std::string mode)

std::string	help ()

int	obiwan_main (Vec_Str args, std::ostream &out, std::ostream &err)

int	obiwan_main (int argc, char **argv, std::ostream &out, std::ostream &err)

std::string	applyPatch (SP_Library fromLib, IntegerList *coeffPosList, const std::string &coeffData, SP_Library lib, int pos)

static ScaleUtils::IO::DB	baseOptions ()

int	view (const Origen::Library &lib, ScaleUtils::IO::DB opts, std::ostream &out, std::ostream &err)

int	view (const StateSet &state_set, ScaleUtils::IO::DB opts, std::ostream &out, std::ostream &err)

int	view (const DecayResource &decay_resource, ScaleUtils::IO::DB opts, std::ostream &out, std::ostream &err)

int	view (const YieldResource &yield_resource, ScaleUtils::IO::DB opts, std::ostream &out, std::ostream &err)

const char *	version ()

const char *	config (const char *field="")

std::string	doIndent (int indent)

std::string	toYesNo (bool yes_no)

void	setup_search_variables (const std::vector< NuclideId > &in_sizzzaaa_list, std::map< NuclideId, size_t > &nind_lookup)

bool	check_sizes (size_t total_nuclides, size_t total_transitions, std::vector< int > &num_decay_parents, std::vector< int > &num_parents, std::vector< int > &parent_positions, std::vector< int > &transition_ids, std::vector< double > &transition_coeff)

template<typename T >
void	vector_copy (size_t nelem, size_t start, const std::vector< T > *old_list, std::vector< T > &new_list)

template<typename T >
void	shrink_to_fit (std::vector< T > &x)

double	calculate_neutron_production_xs (SP_Nuclide residual)

template<typename TS_t , typename DirectYields_t >
std::map< int, std::pair< CrossSection1d *, SP_Transition > >	collect_direct_yields (SP_Field neutron_field, SP_Nuclide nuclide, int izzzaaa, TS_t ts, LibraryNuclide *ampx_nuclide, const DirectYields_t &direct_yields)

Variables
const int	TIME_S = 1

const int	TIME_M = 2

const int	TIME_H = 3

const int	TIME_D = 4

const int	TIME_Y = 5

const int	SUBLIB_LEGACY_ELEMENT = 4

const double	EMIN = 1e-99

const double	EMAX = 1e+99

const double	ETOL = 1e-11

const double	ERR = 1.0e-44

const int	BAD_INT = std::numeric_limits<int>::max()

const double	BAD_DOUBLE = std::numeric_limits<double>::max()

const float	BAD_FLOAT = std::numeric_limits<float>::max()

const size_t	BAD_SIZE_T = std::numeric_limits<size_t>::max() / 2 - 1

const double	BRANCH_RATIO_TOLERANCE

const double	YIELD_TOLERANCE = 100 * std::numeric_limits<float>::epsilon()

const double	MAXIMUM_MASSNUMBER_LOST = 0.3

const double	MAXIMUM_MASS_LOST = 0.01

const double	MAXIMUM_ZZZAAA_LOST = 0.5

const double	NUCLEON_TOLERANCE = 1e-6

const double	MINIMUM_HEAVY_PARTICLE_MASS = 0.5

const double	NEUTRON_MASS = 1.00866491600

const double	PROTON_MASS = 1.007276466812

const double	ELECTRON_MASS = 5.4857990946e-4

const double	DEUTERON_MASS = 2.013553212712

const double	TRITON_MASS = 3.0155007134

const double	HELION_MASS = 3.0149322468

const double	ALPHA_MASS = 4.001506179125

const double	POSITRON_MASS = 5.4857990946e-4

const double	NEUTRINO_MASS = 1e-20

const double	NULL_MASS = 0.0

const int	SUBLIB_1LT = 1

const int	SUBLIB_2AC = 2

const int	SUBLIB_3FP = 3

const int	SUBLIB_4U1 = 4

const int	SUBLIB_5U2 = 5

const int	SUBLIB_6U3 = 6

const int	SUBLIB_7U4 = 7

const int	SUBLIB_8TA = 8

const int	SUBLIB_9BY = 9

const FieldId	NULL_FIELD = 0
	field numbers used when accessing fields by FieldId More...

const FieldId	NEUTRON_FIELD = 1

const FieldId	PROTON_FIELD = 2

const FieldId	DEUTERON_FIELD = 3

const FieldId	TRITON_FIELD = 4

const FieldId	HELION_FIELD = 5

const FieldId	ALPHA_FIELD = 6

const FieldId	ELECTRON_FIELD = 7

const FieldId	POSITRON_FIELD = 8

const FieldId	PHOTON_FIELD = 9

const FieldId	NEUTRINO_FIELD = 10

const ByproductId	NULL_BYPRODUCT_ID = BAD_INT
	byproduct ids used when accessing byproducts by ByproductId More...

const ByproductId	NEUTRON_BYPRODUCT_ID = 1

const ByproductId	PROTON_BYPRODUCT_ID = 1001

const ByproductId	DEUTERON_BYPRODUCT_ID = 1002

const ByproductId	TRITON_BYPRODUCT_ID = 1003

const ByproductId	HELION_BYPRODUCT_ID = 2003

const ByproductId	ALPHA_BYPRODUCT_ID = 2004

const ByproductId	ELECTRON_BYPRODUCT_ID = -1000

const ByproductId	POSITRON_BYPRODUCT_ID = 1000

const ByproductId	NEUTRINO_BYPRODUCT_ID = 0

const int	NEUTRON_MASS_NUMBER = 1
	mass numbers More...

const int	PROTON_MASS_NUMBER = 1

const int	DEUTERON_MASS_NUMBER = 2

const int	TRITON_MASS_NUMBER = 3

const int	HELION_MASS_NUMBER = 3

const int	ALPHA_MASS_NUMBER = 4

const int	ELECTRON_MASS_NUMBER = 0

const int	POSITRON_MASS_NUMBER = 0

const int	NEUTRINO_MASS_NUMBER = 0

const int	NULL_MASS_NUMBER = 0

const int	NEUTRON_CHARGE_NUMBER = 0
	charge/atomic numbers More...

const int	PROTON_CHARGE_NUMBER = 1

const int	DEUTERON_CHARGE_NUMBER = 1

const int	TRITON_CHARGE_NUMBER = 1

const int	HELION_CHARGE_NUMBER = 2

const int	ALPHA_CHARGE_NUMBER = 2

const int	ELECTRON_CHARGE_NUMBER = -1

const int	POSITRON_CHARGE_NUMBER = +1

const int	NEUTRINO_CHARGE_NUMBER = 0

const int	NULL_CHARGE_NUMBER = 0

static const int	INTERP_PREFERRED = 0

static const int	INTERP_HISTOGRAM = 1

static const int	INTERP_LINLIN = 2

static const int	INTERP_LINLOG = 3

static const int	INTERP_LOGLIN = 4

static const int	INTERP_LOGLOG = 5

static const int	IMPLICIT_BYPRODUCT_MAX_MASSNUMBER = 4

Detailed Description

This description has been copied from the SCALE 6.1 Manual, pg. F7.A.1, the section titled "F7.A. DESCRIPTION OF CONCENTRATION BINARY FILES". Only minor formatting adjustments have been made.

The concentrations, in units gram-atoms, of all the ORIGEN-S nuclides may be saved to the binary file associated with unit NXTR, by applying the unit number input in the 0$ data or the default of 71 (which makes the file named ft71f001). These concentrations may be read in a subsequent run to define the initial concentrations for a restart case. The input descriptions in Sects. F7.6.3 and F7.6.4 have details of using NXCMP in the 56$ data to apply input from NXTR or using MOUT and MSUB in the 56$ data to save concentrations and spectral data at requested time steps on unit NXTR. There are other uses of unit NXTR, related to creating certain photon libraries, that should not be applied if concentrations are wanted. All of the data associated with a given time step are saved in two binary records. The position of each of these pair of records is dependent upon the order in which the time step is saved. If data at a given position are read from NXTR (e.g., restart case), the first subsequent time step saved will be located in the next position after that of the input time step record. It is recommended that the user copy the file before using it, particularly if data following that input needs to be saved and is to be written over. At the end of a job in which data are saved in NXTR, the first record of the pair described above is written again with the first variable set to zero, making a termination record. The remaining variables are not used. Also, arrays pertaining to spectral data that were not requested by the input would have meaningless data and should not be used. The first record, in the pair discussed above, is always written with the same set of variables. The three Fortran 90 write statements are as follows:

!Record Type 1
write (unit=n96) itxx, ilite, iact, ifp, nrflag, msub1, nstepo, &
    kasepo, jobpos, nocs, noblnd, ndset, ntype, ngrp, nelem, &
    nvert, ng, mmn, mout, index, mstar, nunit, kblend, nenle, &
    nenac, nenfp, l1, l2, l3, l4, tmo, fracpw, tconst, tunit, &
    twrite, pwrite, fwrite
!Record Type 2
write (unit=n96) (nucl(i),i=1,itot), (x(msub1,j),j=1,itot), &
    title, basis, (egamle(i1),i1=1,n1), (egamac(i2),i2=1,n2), &
    (egamfp(i3),i3=1,n3), (specle(i4,msub),i4=1,l1), &
    (specac(i5,msub),i5=1,l2), (specfp(i6,msub),i6=1,l3), &
    (ener(i7),i7=1,n4), (dsav(i8,msub),i8=1,ng), &
    (esav(i9,msub),i9=1,ng), (itsav(i10,msub),i10=1,20), &
    (spnnuc(i11,msub),i11=1,l4),(alpnuc(i12,msub),i12=1,l4), &
    (spneut(i13,msub),i13=1,ngrp), & (specan(i14,msub),i14=1,ngrp), &
    (specsp(i15,msub),i15=1,ngrp),(eneuts(i16),i16=1,n5)

where

n2 = nenac + 1
n3 = nenfp + 1
n4 = ng + 1
n5 = ngrp + 1

The variable and array descriptions below indicate the position of the listed variable, the variable name, the size of an array or a character variable, and the variable‘s definition or meaning. The first record contains only integers, except for one character variable, TUNIT. Most of the values are sizes of libraries, spectrum energy-group sizes, or other array sizes. Some values indicate the data position in the file. Some are code flags or triggers used in specifying data. The second type of record contains only arrays, either numerical or character types, where the sizes are either given or readily obtained (e.g., by adding one) from the first record values. The spectra energy-group structures are in ascending order. The gamma spectra may pertain to all nuclides in the problem, or a subset of nuclides (e.g., actinides only) as determined from the case input description used to generate the spectra.

The first record description follows.

Record Type 1

ITXX total number of nuclides or '0' to signal an end-of-file
ILITE number of nuclides in light element library - 0 if not using
IACT number of nuclides in actinide library - 0 if not using
IFP number of nuclides in fission product library - 0 if not using
NRFLAG flag that determines position numbers for data set to be saved
MSUB1 time step number of the data to be saved
NSTEPO position of requested data in concentration file
KASEPO position of the requested case in the concentration file
JOBPOS position in the file of the job containing the requested data
NOCS case number in the case containing the requested data
NOBLND 0/1/N – job termination/no blending/N streams blended
NDSET nuclear data library unit number
NTYPE the type of library on NDSET, 0/>0 card-image/binary library
NGRP the number of neutron energy groups
NELEM maximum atomic number of nuclides in library
NVERT -N/0/N – request integral option and writing N/not wanted/reading N
NG the number of photon energy groups in the master photon library
MMN number of irradiation time-step intervals in a case
MOUT controls writing concentrations on unit NXTR If MOUT=0 and MSUB=m, concentration for time step m is written If MOUT=-N and MSUB>= 0, concentrations for time steps MSUB through N, inclusive, are written
INDEX 0/1 – power read in 58* array/flux read in 59* array
MSTAR time step at which concentration print cutoffs are applied
NUNIT 1/2/3/4/5/6 – time (in 60*) units s/min/h/d/y/other
KBLEND time-step number indicating when blending is to occur
NENLE number of groups in light element photon library
NENAC number of groups in actinide photon library
NENFP number of groups in fission product photon library
L1 max0(1, NENLE)
L2 max0(1, NENAC)
L3 max0(1, NANFP)
L4 max0(1, IACT)
TMO time at start of first time step
FRACPW ratio of case irradiation time to total case irradiation time
TCONST If NUNIT=6, number of seconds in the special time unit.
TUNIT time unit printed in output (4-character variable)
TWRITE value of time-step accumulative time of concentrations written in file
PWRITE value of time-step power of concentrations written in file
FWRITE value of time-step flux of concentrations written in the file

Record Type 2

NUCL(ITXX) ITXX values of nuclide IDs as ZAS (Z=atomic number, A=mass number, S=metastable state, S=0 for ground state) X(ITXX) ITXX values of gram-atom concentrations, at step requested MSUB TITLE(20) 80-character title for this case if NTI=1 or 3 BASIS(10) 40-character title for basis of calculation - may be blank if NTI=2 or 3 EGAMLE(NENLE+1) Gamma group boundaries for light elements EGAMAC(NENAC +1) Gamma group boundaries for actinides EGAMFP(NENFP +1) Gamma group boundaries for fission products SPECLE(L1) L1 values of gamma source spectrum for light elements in photons/s SPECAC(L2) L2 values of gamma source spectrum for actinides in photons/s SPECFP(L3) L3 values of gamma source spectrum for fission products in photons/s ENER(NG+1) NG +1 values of gamma energy group boundaries on master photon library DSAV(NG) NG values of master photon spectrum in photons/s ESAV(NG) NG values of master photon spectrum in MeV/s ITSAV(20) 80-character photon spectrum title SPNNUC(L4) L4 values of spontaneous fission neutron source in neutrons/s ALPNUC(L4) L4 values of actinide nuclide (α,n) source in neutrons/s SPNEUT(NGRP) NGRP values of total neutron spectrum in neutrons/s SPECAN(NGRP) NGRP values of (α,n) spectrum in neutrons/s SPECSP(NGRP) NGRP values of spontaneous fission neutron spectrum in neutrons/s ENEUTS(NGRP+1) NGRP+1 Neutron energy-group boundaries

For each time step, ORIGEN writes one of each of these record types.

Typedef Documentation

typedef AlphaSpectra::SP SP_AlphaSpectra

typedef AlphaSpectra::SCP SCP_AlphaSpectra

typedef BetaSpectra::SP SP_BetaSpectra

typedef BetaSpectra::SCP SCP_BetaSpectra

typedef Concentrations::SP SP_Concentrations

typedef Concentrations::SCP SCP_Concentrations

typedef DecayData::SP SP_DecayData

typedef DecayData::SCP SCP_DecayData

typedef Vec_Dbl EnergyBounds

typedef std::pair<double, double> Line

typedef std::set<Line, std::greater<Line> > Set_Line

typedef EmissionSpectrum::SP SP_Emission

typedef EmissionSpectrum::SCP SCP_Emission

typedef GammaSpectra::SP SP_GammaSpectra

typedef GammaSpectra::SCP SCP_GammaSpectra

typedef GridView_TransitionCoeff::SP SP_GridView_TransitionCoeff

typedef Quantity<Unitless> U

typedef Library::SP SP_Library

Examples:: tstCRAM.cpp, tstGridView.cpp, tstLibrary.cpp, tstLibraryIO.cpp, tstMaterial.cpp, tstMaterialBuffer.cpp, and tstParallelDepletion.cpp.

typedef Library::SCP SCP_Library

typedef LibraryHeader::SP SP_LibraryHeader

typedef LibraryHeader::SCP SCP_LibraryHeader

typedef std::shared_ptr<DoubleList> SP_DoubleList

typedef Origen::TransitionMatrixP TrMatrix

typedef std::shared_ptr<TrMatrix> SP_TrMatrix

typedef std::deque<SP_TrMatrix> Deq_TrMatrix

typedef std::deque<SP_DoubleList> Deq_Amt

typedef std::deque<Removal::SP> Deq_Removal

typedef std::shared_ptr<MaterialBuffer> SP_MaterialBuffer

typedef std::shared_ptr<Material> SP_Material

Examples:: exNEAMS.cpp, and tstMaterial.cpp.

typedef std::shared_ptr<MaterialMap> SP_MaterialMap

Examples:: tstMultiZoneDepleter.cpp.

typedef NeutronSpectra::SP SP_NeutronSpectra

typedef NeutronSpectra::SCP SCP_NeutronSpectra

typedef NuclideSet::SP SP_NuclideSet

typedef NuclideSet::SCP SCP_NuclideSet

typedef Spectrum::SP SP_Spectrum

typedef Spectrum::SCP SCP_Spectrum

typedef State::SP SP_State

typedef State::SCP SCP_State

typedef StateInfo::SP SP_StateInfo

typedef StateInfo::SCP SCP_StateInfo

typedef std::pair<double, double> Pair_TB

typedef std::pair<Pair_TB, SCP_NeutronSpectra> Pair_NSpectra

typedef std::pair<Pair_TB, SCP_AlphaSpectra> Pair_ASpectra

typedef std::pair<Pair_TB, SCP_BetaSpectra> Pair_BSpectra

typedef std::pair<Pair_TB, SCP_GammaSpectra> Pair_GSpectra

typedef std::pair<Pair_TB, SCP_Concentrations> Pair_Concs

typedef std::vector<Pair_NSpectra> Vec_Pair_NSpectra

typedef std::vector<Pair_ASpectra> Vec_Pair_ASpectra

typedef std::vector<Pair_BSpectra> Vec_Pair_BSpectra

typedef std::vector<Pair_GSpectra> Vec_Pair_GSpectra

typedef std::vector<Pair_Concs> Vec_Pair_Concs

typedef std::vector<SP_State> Vec_SP_State

typedef std::shared_ptr<Vec_SP_State> SP_Vec_SP_State

typedef StateSet::SP SP_StateSet

Examples:: tstio.cpp, and tstStateSetIO.cpp.

typedef StateSet::SCP SCP_StateSet

typedef TagManager::SP SP_TagManager

Examples:: tstGridView.cpp, and tstTagManager.cpp.

typedef TagManager::SCP SCP_TagManager

typedef TransitionCoeff::SP SP_TransitionCoeff

Examples:: tstinterp.cpp, and tstLibrary.cpp.

typedef TransitionCoeff::SCP SCP_TransitionCoeff

typedef TransitionMatrixP::SP SP_TransitionMatrixP

Examples:: tstMaterial.cpp, and tstSolver_matrex.cpp.

typedef TransitionMatrixP::SCP SCP_TransitionMatrixP

typedef TransitionStructure::SP SP_TransitionStructure

typedef TransitionStructure::SCP SCP_TransitionStructure

typedef std::shared_ptr<Diff> SP_Diff

typedef std::shared_ptr<STab1> SP_STab1

smart pointer

typedef DecayResource::SP SP_DecayResource

Examples:: tstTransitionSystemAdapter_DecayResource.cpp.

typedef DecayResource::SCP SCP_DecayResource

typedef EmissionResource::SP SP_EmissionResource

typedef EmissionResource::SCP SCP_EmissionResource

typedef GammaResource::SP SP_GammaResource

typedef GammaResource::SCP SCP_GammaResource

typedef NuclideResource::SP SP_NuclideResource

typedef NuclideResource::SCP SCP_NuclideResource

typedef ReactionResource::SP SP_ReactionResource

typedef ReactionResource::SCP SCP_ReactionResource

typedef std::map<int, int> FPMap_t

typedef std::map<int, int> ParentMap_t

typedef std::shared_ptr<YieldResource> SP_YieldResource

Examples:: tstYieldResourceIO.cpp.

typedef std::shared_ptr< TransitionSystem > SP_TransitionSystem

Examples:: tstTransitionSystemAdapter_DecayResource.cpp.

typedef std::shared_ptr<Species> SP_Species

typedef std::shared_ptr<Field> SP_Field

typedef std::shared_ptr<ChannelType> SP_ChannelType

typedef std::shared_ptr<Channel> SP_Channel

typedef std::shared_ptr<Nuclide> SP_Nuclide

typedef std::shared_ptr<Transition> SP_Transition

typedef Species* WP_Species

typedef Field* WP_Field

typedef ChannelType* WP_ChannelType

typedef Channel* WP_Channel

typedef Nuclide* WP_Nuclide

typedef Transition* WP_Transition

typedef TransitionSystem* WP_TransitionSystem

typedef const Species* CWP_Species

typedef const Field* CWP_Field

typedef const ChannelType* CWP_ChannelType

typedef const Channel* CWP_Channel

typedef const Nuclide* CWP_Nuclide

typedef const Transition* CWP_Transition

typedef const TransitionSystem* CWP_TransitionSystem

typedef std::map<ByproductId, int> ByproductCount_t

typedef std::shared_ptr<CompManager> SP_CompManager

typedef std::shared_ptr<MultiZoneDepleter> SP_MultiZoneDepleter

typedef std::shared_ptr<Solver> SP_Solver

typedef std::shared_ptr<const Solver> SCP_Solver

typedef std::shared_ptr<Solver_Fake> SP_Solver_Fake

typedef std::vector<Transition::WP> Vec_Trans

typedef ScaleData::MGFluxMapper<float> MGFluxMapper

typedef std::shared_ptr<MGFluxMapper> SP_MGFluxMapper

typedef std::shared_ptr<SolverSelector> SP_SolverSelector

typedef std::shared_ptr<const SolverSelector> SCP_SolverSelector

Enumeration Type Documentation

enum ConcentrationUnit

Enumerator
NOT_GIVEN	not given – invalid state (or not set)
GATOMS	Gram atoms, gram-atomic weights or moles.
ATOMS_B_CM	Atoms/barn-cm.
GRAMS	Mass, grams.
CURIES	Radioactivity, Ci.
ABSORPTIONS	total capture reaction rate
CAPTURES	(total capture - fission) reaction rate
FISSIONS	fission reaction rate
AIRM_3	Toxicity, cubic meters of air to dilute to RCG_a.
APELEM	Atom % of element. Isotopic atom percents of all elements.
BECQUERELS	Radioactivity, Bq.
GAMWATTS	Gamma-ray thermal power, watts.
GAMMEVS	Gamma-ray thermal power, MeV.
GPERCM_3	Partial density, grams/cubic cm.
H2OM_3	Toxicity, cubic meters of water to dilute to RCG_w.
KILOGRAMS	Mass, kilograms.
WPELEM	Weight % of element. Isotopic weight percents of all elements.
WATTS	Total thermal power, watts.
MEVS	Total thermal power, MeVs.
PARTICLES_SEC	Spectra particles per second.
PARTICLES_SEC_MEV	Photon spectra intensity photons per second MeV.
ENERGY_SEC_MEV	Photon spectra energy intensity in MeV per second*MeV.
MOLES	Mole unit.
CM_2_BARN	cm^2/barn unit.
WPPM	weight fraction in ppm (*1e6)
APPM	atom fraction in ppm (*1e6)
LAST_CONCENTRATION_UNIT	Always add new ones before this.

enum Representation

Enumerator
CONSTANT
LINEAR

enum YieldType

Enumerator
YIELD_UNKNOWN
YIELD_SIMPLE
YIELD_ISOMERIC
YIELD_DISTRIBUTED
YIELD_MISSING

Function Documentation

string convertConcUnitToPrettyString ( ConcentrationUnit unit )

Examples:: tstConcentrationUnit.cpp.

References ABSORPTIONS, AIRM_3, APELEM, APPM, ATOMS_B_CM, BECQUERELS, CAPTURES, CM_2_BARN, CURIES, ENERGY_SEC_MEV, FISSIONS, GAMMEVS, GAMWATTS, GATOMS, GPERCM_3, GRAMS, H2OM_3, KILOGRAMS, MEVS, MOLES, PARTICLES_SEC, PARTICLES_SEC_MEV, WATTS, WPELEM, and WPPM.

Referenced by printConcentrations_csv(), StateSetIO_bof::read(), StateSetIO_s62b::read(), TEST(), Concentrations::to_json(), and StateSetIO_s62b::write().

string convertConcUnitToString ( ConcentrationUnit unit )

Examples:: tstConcentrationUnit.cpp.

References ABSORPTIONS, AIRM_3, APELEM, APPM, ATOMS_B_CM, BECQUERELS, CAPTURES, CM_2_BARN, CURIES, ENERGY_SEC_MEV, FISSIONS, GAMMEVS, GAMWATTS, GATOMS, GPERCM_3, GRAMS, H2OM_3, KILOGRAMS, LAST_CONCENTRATION_UNIT, MEVS, MOLES, PARTICLES_SEC, PARTICLES_SEC_MEV, WATTS, WPELEM, and WPPM.

Referenced by TEST().

ConcentrationUnit convertStringToConcUnit ( const string & value )

Examples:: tstConcentrationUnit.cpp.

References ABSORPTIONS, AIRM_3, APELEM, APPM, ATOMS_B_CM, BECQUERELS, CAPTURES, CM_2_BARN, CURIES, ENERGY_SEC_MEV, FISSIONS, GAMMEVS, GAMWATTS, GATOMS, GPERCM_3, GRAMS, H2OM_3, KILOGRAMS, MEVS, MOLES, NOT_GIVEN, PARTICLES_SEC, PARTICLES_SEC_MEV, WATTS, WPELEM, and WPPM.

Referenced by main(), TEST(), and view().

int unitAsInt ( const ConcentrationUnit & unit )

Obtain the integer enumeration for the given origen f71 concentration

Parameters

unit	- the concentration unit (GATOMS,ATOMS_B_CM,GRAMS,CURIES)

Returns: the f71 integer enumeration

Examples:: tstConcentrationUnit.cpp.

References ATOMS_B_CM, CURIES, GATOMS, and GRAMS.

Referenced by TEST(), StateSetIO_s62b::write(), and StateSetIO_bof::write().

ConcentrationUnit intAsUnit ( const int & unit )

Obtain the concentration enumeration for the given origen f71 int concentration

Parameters

unit	- the int f71 unit enumeration (0,1,2,3)

Returns: the f71 concentration enumeration (GATOMS,ATOMS_B_CM,GRAMS,CURIES)

Examples:: tstConcentrationUnit.cpp.

References ATOMS_B_CM, CURIES, GATOMS, GRAMS, and NOT_GIVEN.

Referenced by StateSetIO_bof::read(), StateSetIO_s62b::read(), and TEST().

bool isMassUnit ( ConcentrationUnit unit )

Examples:: tstConcentrationUnit.cpp.

References GPERCM_3, GRAMS, KILOGRAMS, WPELEM, and WPPM.

Referenced by ConcentrationConverter::convert_to(), ConcentrationConverter::mol2m(), and TEST().

bool isNumberUnit ( ConcentrationUnit unit )

Examples:: tstConcentrationUnit.cpp.

References APELEM, APPM, ATOMS_B_CM, CM_2_BARN, GATOMS, and MOLES.

Referenced by ConcentrationConverter::convert_to(), ConcentrationConverter::mol2n(), and TEST().

bool isDecayUnit ( ConcentrationUnit unit )

Examples:: tstConcentrationUnit.cpp.

References AIRM_3, BECQUERELS, CURIES, GAMMEVS, GAMWATTS, H2OM_3, MEVS, and WATTS.

Referenced by ConcentrationConverter::convert_to(), ConcentrationConverter::mol2d(), and TEST().

bool isSpectrumUnit ( ConcentrationUnit unit )

Examples:: tstConcentrationUnit.cpp.

References ENERGY_SEC_MEV, PARTICLES_SEC, and PARTICLES_SEC_MEV.

Referenced by ConcentrationConverter::convert_to(), and TEST().

bool isReactionUnit ( ConcentrationUnit unit )

Examples:: tstConcentrationUnit.cpp.

References ABSORPTIONS, CAPTURES, and FISSIONS.

Referenced by ConcentrationConverter::convert_to(), and TEST().

bool isVolumetric ( ConcentrationUnit unit )

Examples:: tstConcentrationUnit.cpp.

References ATOMS_B_CM, and GPERCM_3.

Referenced by Concentrations::accumulate_concs(), needsVolumeToConvert(), and TEST().

bool needsVolumeToConvert	(	ConcentrationUnit	unita,
		ConcentrationUnit	unitb
	)

Examples:: tstConcentrationUnit.cpp.

References isVolumetric().

Referenced by ConcentrationConverter::convert_to(), and TEST().

double Origen::Energy::base< Energy::JOULE > ( )

inline

double Origen::Energy::base< Energy::EV > ( )

inline

double Origen::Energy::base< Energy::KWH > ( )

inline

double Origen::Energy::base< Energy::MWD > ( )

inline

double Origen::Energy::base< Energy::GWD > ( )

inline

double Origen::Energy::base< Energy::GWYR > ( )

inline

std::string Origen::Energy::name< Energy::JOULE > ( )

inline

std::string Origen::Energy::name< Energy::EV > ( )

inline

std::string Origen::Energy::name< Energy::KWH > ( )

inline

std::string Origen::Energy::name< Energy::MWD > ( )

inline

std::string Origen::Energy::name< Energy::GWD > ( )

inline

std::string Origen::Energy::name< Energy::GWYR > ( )

inline

Vec_Int Origen::create_zzzaaai_seq1 ( size_t total_nuclides )

Referenced by createNuclideSet_random1(), and FakeFactory::StateSet_random1().

NuclideSet Origen::createNuclideSet_random1 ( )

References create_zzzaaai_seq1(), and NuclideSet::set_ids_legacy().

Referenced by FakeFactory::createLibraryHeader_random1().

Vec_Int Origen::createNuclideIds5 ( )

Examples:: tstNuclideSet.cpp.

Referenced by TEST().

Vec_Int Origen::createNuclideIds6 ( )

Examples:: tstNuclideSet.cpp.

Referenced by TEST().

DecayData Origen::createDecayData_random1 ( const LibraryHeader & def )

References CREATE_FLOAT_VEC_DIRECT, CREATE_INT_VEC_DIRECT, LibraryHeader::nuclide_set(), NuclideSet::num_in_sublib(), SUBLIB_1LT, and NuclideSet::total_nuclides().

Referenced by FakeFactory::DecayData_random1(), and FakeFactory::Library_random1().

TransitionStructure Origen::createTransitionStructure_random1 ( const LibraryHeader & def )

References CREATE_INT_VEC, LibraryHeader::nuclide_set(), TransitionStructure::set_num_parents(), and NuclideSet::total_nuclides().

Referenced by FakeFactory::Library_random1(), and FakeFactory::TransitionStructure_random1().

TransitionCoeff Origen::createTransitionCoeff_random1 ( const LibraryHeader & def )

References CREATE_FLOAT_VEC, LibraryHeader::nuclide_set(), NuclideSet::num_in_sublib(), TransitionCoeff::set_burnup(), SUBLIB_1LT, SUBLIB_2AC, and NuclideSet::total_nuclides().

Referenced by FakeFactory::Library_random1(), and FakeFactory::TransitionCoeff_random1().

double Origen::Unitless::base< Unitless::ONE > ( )

inline

std::string Origen::Unitless::name< Unitless::ONE > ( )

inline

double Origen::integrate_history	(	const Vec_Dbl &	scaling,
		const Material::History_t &	hist
	)

Referenced by Material::record_average_flux(), and Material::record_average_power().

std::string Origen::h2string ( const Material::History_t & hist )

Referenced by Material::to_string().

double Origen::Power::base< Power::WATT > ( )

inline

std::string Origen::Power::name< Power::WATT > ( )

inline

void SerialRegistrar ( Standard::SerialFactory * factory )

Registrar for serializable objects.

Parameters

Standard::SerialFactory * factory - the factory to which Library objects are registered

Examples:: tstLibrary.cpp.

Referenced by TEST_F().

std::vector< implicitTag > checkImplicitTags	(	const std::vector< TagManager > &	tagManList,
		const TagManager &	tm
	)

Function to check the tag managers from a set of TagManagers (e.g., from a set of Library objects) to enssure that they have all of the tags requested in a reference TagManager. Then checks to see if the libraries have any other interpolable tags. If so, these are collected along with all of the values for that tag on all of the TagManagers and returned.

Parameters

tagManList	List of all of the tag managers in question.
tm	Reference TagManager.

Returns: List of implicitTag structures, which contains the name and a vector of values corresponding to that tag name from all of the libraries.

References TagManager::compare(), TagManager::hasTag(), implicitTag::name, and implicitTag::values.

Referenced by interpLibraryND().

void addImpliedTags	(	const std::vector< implicitTag > &	tagSpans,
		TagManager *	tm,
		Vec_Str *	dimNames
	)

Function to add unspecified interpolable tags to a reference tag manager with the average value of that tag over all libraries provided.

Parameters

tagSpans	List of implicitTag structure which contains the name of a tag and all of the values that tag has on all of the libraries in use.
tm	Reference TagManager to which the implied tags will be added.

References TagManager::setInterpTag().

Referenced by interpLibraryND().

std::string parseTags	(	const std::string &	str,
		Vec_Str *	tags,
		Vec_Str *	values,
		Vec_Bool *	modify
	)

parse the command line argument that has tags of the form tag1,tag2=,tag3=val3,... convenient for use with TagManager

Referenced by Obiwan_interp::populate(), and Obiwan_tag::populate().

double Origen::Time::base< Time::SECONDS > ( )

inline

double Origen::Time::base< Time::MINUTES > ( )

inline

double Origen::Time::base< Time::HOURS > ( )

inline

double Origen::Time::base< Time::DAYS > ( )

inline

double Origen::Time::base< Time::YEARS > ( )

inline

std::string Origen::Time::name< Time::SECONDS > ( )

inline

std::string Origen::Time::name< Time::MINUTES > ( )

inline

std::string Origen::Time::name< Time::HOURS > ( )

inline

std::string Origen::Time::name< Time::DAYS > ( )

inline

References Time::base().

std::string Origen::Time::name< Time::YEARS > ( )

inline

bool Origen::nuclide_in_bounds	(	const int	n,
		const int	ntotal
	)

Referenced by TransitionMatrixP::get_xs(), and TransitionMatrixP::set_xs().

bool Origen::only_set_component ( const int mt_in )

Referenced by TransitionMatrixP::set_xs().

void Origen::toQString_tinds_2d	(	const IntegerList &	nind_list,
		const IntegerList &	transition_ids,
		const Integer2dList &	tinds_2d
	)

Referenced by TransitionMatrixP::fast_set_xs(), and TransitionMatrixP::setup_fast_transition_access().

void read	(	const bof::BOFObject &	obj,
		TagManager &	tag_manager
	)

read a tag manager from a bof object

read TagManager from BOF object

Examples:: tstGammaResourceIO.cpp.

References TagManager::setIdTag(), and TagManager::setInterpTag().

Referenced by LibraryHeader::deserialize(), StateInfo::deserialize(), TransitionStructure::deserialize(), Concentrations::deserialize(), TransitionCoeff::deserialize(), LibraryIO_bof::read(), StateSetIO_bof::read(), Accessor< Origen::Concentrations >::read(), Accessor< Origen::TransitionCoeff >::read(), Accessor< Origen::StateInfo >::read(), Accessor< Origen::TagManager >::read(), read(), Accessor< Origen::LibraryHeader >::read(), Accessor< Origen::NuclideSet >::read(), GammaResourceData::SetUp(), and TEST().

void read	(	const bof::BOFObject &	obj,
		std::string	name,
		TagManager &	tag_manager
	)

read a tag manager from a bof object

read TagManager from named BOF sub-object

References read().

void write	(	bof::BOFObject &	obj,
		std::string	name,
		const TagManager &	tag_manager
	)

write a tag manager to a bof object

write TagManager to named BOF sub-object

Referenced by LibraryHeader::serialize(), StateInfo::serialize(), TransitionStructure::serialize(), Concentrations::serialize(), TransitionCoeff::serialize(), LibraryIO_bof::write(), StateSetIO_bof::write(), Accessor< Origen::Concentrations >::write(), Accessor< Origen::TransitionCoeff >::write(), Accessor< Origen::StateInfo >::write(), Accessor< Origen::TagManager >::write(), write(), Accessor< Origen::LibraryHeader >::write(), and Accessor< Origen::NuclideSet >::write().

void write	(	bof::BOFObject &	obj,
		const TagManager &	tag_manager
	)

write a tag manager to a bof object

write TagManager to BOF object

References TagManager::listIdTags(), TagManager::listIdValues(), TagManager::listInterpTags(), TagManager::listInterpValues(), and write().

void read	(	const bof::BOFObject &	obj,
		std::string	name,
		StateInfo &	states_info
	)

read state info from a bof object

read StateInfo from named BOF sub-object

References read().

void read	(	const bof::BOFObject &	obj,
		StateInfo &	states_info
	)

read state info from a bof object

read StateInfo from BOF object

References read(), StateInfo::set_case_number(), StateInfo::set_energy(), StateInfo::set_fluence(), StateInfo::set_flux(), StateInfo::set_library_position(), StateInfo::set_power(), StateInfo::set_step_number(), StateInfo::set_tag_manager(), and StateInfo::set_time().

void write	(	bof::BOFObject &	obj,
		std::string	name,
		const StateInfo &	states_info
	)

write state info to a bof object

write StateInfo to named BOF sub-object

References write().

void write	(	bof::BOFObject &	obj,
		const StateInfo &	states_info
	)

write state info to a bof object

write StateInfo to BOF object

References StateInfo::case_number(), StateInfo::energy(), StateInfo::fluence(), StateInfo::flux(), StateInfo::library_position(), StateInfo::power(), StateInfo::step_number(), StateInfo::tag_manager(), StateInfo::time(), and write().

SP_Diff diffLibrary	(	const Library &	a,
		const Library &	b,
		int	pos,
		double	reltol
	)

Examples:: tstTransitionSystemAdapter_DecayResource.cpp.

References construct_coeff_map().

Referenced by Obiwan_diff::diff(), TEST(), and TEST_F().

std::string diffConcentrations	(	const Concentrations &	a,
		const Concentrations &	b,
		double	reltol
	)

References NuclideSet::get_ids(), Concentrations::get_vals(), and Concentrations::nuclide_set().

Referenced by Obiwan_diff::diff(), TEST(), and TEST_P().

std::string diffLine	(	const std::string &	head,
		const T &	val1,
		const T &	val2,
		float	tol = `1.0e-5`
	)

Referenced by Obiwan_diff::diff().

std::string diffHalfLine	(	const std::string &	head,
		const T &	val,
		const int &	side
	)

Referenced by Obiwan_diff::diff().

void graphvizLibrary	(	const Library &	lib,
		int	pos,
		std::ostream &	os
	)

Referenced by view().

void graphvizLibrary	(	const Library &	lib,
		int	pos,
		const std::vector< double > *	numden,
		const NuclideGroupFilter &	nfilter,
		const TransitionGroupFilter &	tfilter,
		bool	include_byproducts,
		std::ostream &	os
	)

References Library::definition(), kernel_rksuite::f(), TransitionGroupFilter::filter(), NuclideGroupFilter::filter(), NuclideSet::ids(), Library::newsp_transition_matrix_at(), and LibraryHeader::nuclide_set().

SP_Library interpLibraryND	(	const std::vector< TagManager > &	tagManList,
		const TagManager &	tm
	)

Examples:: tstinterp.cpp.

References addImpliedTags(), checkImplicitTags(), GridData_TransitionCoeff::get_tm_indexMap(), GridData_TransitionCoeff::getWts(), TransitionCoeff::has_kappa_capture(), TransitionCoeff::has_kappa_fission(), GridData_TransitionCoeff::interpolate_transition_coeff(), TransitionCoeff::kappa_capture_size(), TransitionCoeff::kappa_fission_size(), TagManager::listInterpTags(), loadLibrary(), GridData_TransitionCoeff::setr(), and GridData_TransitionCoeff::setx().

Referenced by Obiwan_interp::execute(), and TEST().

SP_Library interpLibraryND	(	const std::vector< SCP_Library > &	libList,
		const TagManager &	tm
	)

on-disk

References addImpliedTags(), checkImplicitTags(), GridData_TransitionCoeff::get_tm_indexMap(), GridData_TransitionCoeff::getWts(), GridData_TransitionCoeff::interpolate_transition_coeff(), TagManager::listInterpTags(), GridData_TransitionCoeff::setr(), and GridData_TransitionCoeff::setx().

std::vector< TagManager > selectLibraries	(	const std::vector< TagManager > &	tmList,
		const TagManager &	tmRef
	)

Function to take a wide selection of Origen Libraries in memory and only return those that have the ID and Interp tags requested in the provided TagManager. Then checks to make sure the ID tag values match.

Parameters

libList	- List of Origen Library TagManagers that contain a subset that match the tags contained in the SP_TagManager tm.
tm	- TagManager containing the ID tags for the type of Libraries that are desired and interp tags with values for the new Library that will be generated using the ND_LibInterp. This function does NOT check the values of the interp tags

Examples:: tstinterp.cpp.

Referenced by Obiwan_interp::execute(), and TEST().

std::vector< SCP_Library > selectLibraries	(	const std::vector< SCP_Library > &	libList,
		const TagManager &	tmRef
	)

Function to take a wide selection of Origen Libraries in memory and only return those that have the ID and Interp tags requested in the provided TagManager. Then checks to make sure the ID tag values match.

libList Set of Origen Library objects containing a subset that have TagManager objects with tags that match the tags in tm

Parameters

tm	- TagManager containing the ID tags for the type of Libraries that are desired and interp tags with values for the new Library that will be generated using the ND_LibInterp. This function does NOT check the values of the interp tags

std::vector< SP_TagManager > collectLibraries ( const std::vector< std::string > & lib_names )

Function that accepts names of Origen library files on disk which can be full paths if necessary.

Parameters

lib_names -vector of strings giving the library file names as a relative or absolute path.

Returns: Vector of SP_TagManager objects from all of the libraries in lib_names with a new ID tag with name "Filename" and value of the string from lib_names.

Examples:: tstio.cpp.

References loadMulti(), and TagManager::setIdTag().

Referenced by collectLibrariesParallel(), and TEST().

std::vector< SP_TagManager > collectLibrariesParallel ( const std::vector< std::string > & lib_names )

Function that accepts names of Origen library files on disk which can be full paths if necessary.

Parameters

lib_names -ector of strings giving the library file names as a relative or absolute path.

Returns: Vector of SP_TagManager objects from all of the libraries in lib_names with a new ID tag with name "Filename" and value of the string from lib_names.

Examples:: tstio.cpp.

References collectLibraries().

Referenced by TEST().

bool Origen::setbuLibrary	(	Library &	obj,
		ScaleUtils::IO::DB &	opts
	)

References TransitionCoeff::set_burnup(), Library::set_transition_coeff_at(), Library::transition_coeff_at(), and Library::transition_coeff_size().

Referenced by convertLibrary().

bool Origen::thinLibrary	(	Library &	obj,
		ScaleUtils::IO::DB &	opts
	)

References TransitionCoeff::burnup(), Library::definition(), Library::delete_transition_coeff_at(), NuclideSet::lookup_index_guess(), LibraryHeader::nuclide_set(), populateLossXsValues(), Library::regrid(), Library::regrid_Interp1D(), Library::set_interpolator(), NuclideSet::symbol_to_izzzaaa(), Library::total_nuclides(), Library::transition_coeff_at(), and Library::transition_coeff_size().

Referenced by convertLibrary().

bool convertLibrary	(	Library &	obj,
		const std::string &	path,
		ScaleUtils::IO::DB &	opts
	)

References saveLibrary(), setbuLibrary(), and thinLibrary().

Referenced by Obiwan_convert::execute().

bool convertStateSet	(	StateSet &	obj,
		const std::string &	path,
		ScaleUtils::IO::DB &	opts
	)

References saveStateSet().

Referenced by Obiwan_convert::execute().

void * loadMulti	(	const std::string &	path,
		ScaleUtils::IO::DB &	opts
	)

References loadDecayResource(), loadLibrary(), loadStateSet(), loadYieldResource(), YieldResource::num_fissionables(), DecayResource::num_parents(), StateSet::states_size(), and Library::transition_coeff_size().

Referenced by collectLibraries(), Obiwan_tag::execute(), Obiwan_patch::execute(), Obiwan_convert::execute(), and Obiwan_diff::execute().

void saveStateSet	(	const MaterialMap &	matmap,
		const std::string &	path,
		ScaleUtils::IO::DB	opts
	)

saves all isotopics in a MaterialMap to an FT71 (StateSet)

Examples:: tstio.cpp, tstObiwan.cpp, and tstStateSetIO.cpp.

References BAD_SIZE_T.

Referenced by convertStateSet(), TEST(), and TEST_F().

void saveStateSet	(	size_t	pstart,
		size_t	pend,
		const MaterialMap &	matmap,
		const std::string &	path,
		ScaleUtils::IO::DB	opts
	)

saves a range of isotopics in a MaterialMap to an FT71 (StateSet) Isotopics from time points p satisfying pstart<=p<=pend are saved. Consider isotopics data at 5 time points.

p=0   1   2   3   4
  |   |   |   |   |

To ask for a dump of p=2,3,4 isotopics, supply pstart=2,pend=4 and the

time points below will be dumped.

p=0 1 2 3 4 | | * * *

References BAD_SIZE_T, Material::flux_over(), Material::get_concs_at(), Material::library(), Material::name(), Material::ntimes(), Material::power_over(), StateInfo::set_case_number(), State::set_concs(), State::set_definition(), StateInfo::set_flux(), StateInfo::set_library_position(), Concentrations::set_nuclide_set(), StateInfo::set_power(), StateInfo::set_step_number(), StateInfo::set_tag_manager(), StateInfo::set_time(), TagManager::setIdTag(), and Material::time_at().

void saveLibraries	(	size_t	pstart,
		size_t	pend,
		const MaterialMap &	matmap,
		const std::string &	pathfmt,
		ScaleUtils::IO::DB	opts
	)

saves a range of transition data in a MaterialMap to an FT33 (Library)

Data from time intervals satisfying pstart<=i<pend are saved, pstart and pend are the starting and ending time points, and i is the time interval. Consider data with 5 time points and therefore 4 intervals.

p=0   1   2   3   4
  |   |   |   |   |
  i=0   1   2   3

To ask for a dump of interval i=2,3 data, you would supply pstart=2,pend=4 and the * intervals below will be dumped.

p=0   1   2   3   4
  |   |   | * | * |
  i=0   1   2   3

Note that transition data is calculated as an average over an interval so that for any data to be dumped, one must have pstart<pend.

Unlike saveStateSet, saveLibraries outputs a file for each material individually. The pathfmt argument allows substitution of both the Material::name() and Material::id(). The path is written using: std::string path=findAndReplace(pathfmt,"$name",mat.name()); if( path.find("%")!=std::string::npos ){ path=nprintf(path.c_str(),mat.id()); }

References BAD_SIZE_T, Material::library(), Material::name(), Material::ntimes(), Library::resize_transition_coeff(), and Material::transition_matrix_over().

void setAppVersionWrite	(	bof::BOFWriter &	writer,
		ScaleUtils::IO::DB &	opts,
		const std::string &	name
	)

References version().

Referenced by LibraryIO_bof::write(), and StateSetIO_bof::write().

std::string Origen::stringifySublib ( int sublib )

References SUBLIB_1LT, SUBLIB_2AC, SUBLIB_3FP, SUBLIB_4U1, SUBLIB_5U2, SUBLIB_6U3, SUBLIB_7U4, SUBLIB_8TA, and SUBLIB_9BY.

Referenced by stringifyNuclide().

std::string stringifyNuclide	(	int	id,
		std::string	idform
	)

idform can include various symbols to be substituted

Examples:: tstpopulate.cpp.

References stringifySublib().

Referenced by printConcentrations_csv(), printTransitionSystemXs(), tabulateMaterialTransitionRates(), tabulateNuclideLabel(), tabulateReactionTransitions(), tabulateTransitionCoeff(), and TEST().

void populateLossXsValues	(	DoubleList *	times,
		DoubleList *	responseValues,
		const Library &	obj,
		const int	nind
	)

References TransitionCoeff::burnup(), TransitionCoeff::loss_xs(), Library::transition_coeff_at(), and Library::transition_coeff_size().

Referenced by thinLibrary().

void populateNuclideResource_StdComp	(	Origen::NuclideResource *	nr,
		const ScaleData::StdComp &	stdcomp
	)

populate a nuclide resource (in place) from a ScaleData::StdComp object

References NuclideResource::Properties::abundance_num, NuclideResource::Properties::abundance_wt, NuclideResource::Properties::mass, and NuclideResource::parent_map.

Referenced by defaultNuclideResource().

std::map< int, double > construct_neutron_yields_map	(	const Library &	x,
		int	pos
	)

References Library::definition(), NuclideSet::ids_at(), TransitionCoeff::neutron_yields(), LibraryHeader::nuclide_set(), and Library::transition_coeff_at().

Referenced by Obiwan_diff::diff(), and printNeutronYields().

std::map< int, double > construct_neutron_prod_map	(	const Library &	x,
		int	pos
	)

References Library::definition(), NuclideSet::ids_at(), TransitionCoeff::loss_xs(), TransitionCoeff::neutron_yields(), LibraryHeader::nuclide_set(), and Library::transition_coeff_at().

Referenced by printNeutronProductionRatio().

std::map< std::pair< int, int >, double > construct_coeff_map	(	const Library &	x,
		int	pos
	)

References Library::definition(), NuclideSet::ids_at(), NuclideSet::ids_size(), TransitionCoeff::matrix(), LibraryHeader::nuclide_set(), TransitionStructure::num_parents(), TransitionStructure::parent_positions(), Library::transition_coeff_at(), and Library::transition_structure().

Referenced by diffLibrary().

void populateLibraryToxicity_DecayResource	(	Library *	lib,
		const DecayResource &	dr
	)

populate a library with toxicity factors from a decay resource

References Library::decay_data(), Library::definition(), DecayResource::get_const_parent_map(), NuclideSet::ids(), LibraryHeader::nuclide_set(), DecayData::rcg_for_air, DecayData::rcg_for_water, and Library::set_decay_data().

Referenced by LibraryBuilder::create_decay_library().

void populateLibraryAbundance	(	Library *	lib,
		const ScaleUtils::IO::DB &	opts
	)

populate a library with abundances from a nuclide resource

populate library from options

References DecayData::abund_of_lite_nuclides, Library::decay_data(), NuclideResource::default_resource(), and populateLibraryAbundance_NuclideResource().

Referenced by c_Origen_populateLibraryAbundance(), LibraryIO_s62b::read(), LibraryIO_s61::read(), and LibraryIO_bof::read().

void populateLibraryAbundance_NuclideResource	(	Library *	lib,
		const NuclideResource &	nr
	)

populate a library with abundances from a nuclide resource

References DecayData::abund_of_lite_nuclides, NuclideResource::abundance_num(), Library::decay_data(), Library::definition(), NuclideSet::has_sublib(), NuclideSet::has_sublibs(), NuclideSet::ids(), LibraryHeader::nuclide_set(), NuclideSet::num_in_sublib(), Library::set_decay_data(), and SUBLIB_1LT.

Referenced by LibraryBuilder::create_decay_library(), and populateLibraryAbundance().

void populateLibraryMass_NuclideResource	(	Library *	lib,
		const NuclideResource &	nr
	)

populate a library with mass from a nuclide resource

populate a library with masses from a nuclide resource

References Library::decay_data(), Library::definition(), NuclideSet::izzzaaa_at(), NuclideResource::mass(), LibraryHeader::nuclide_set(), Library::set_decay_data(), and NuclideSet::total_nuclides().

Referenced by LibraryBuilder::create_decay_library(), and populateLibraryMass().

void populateLibraryDecayEnergy_DecayResource	(	Library *	lib,
		const DecayResource &	dr
	)

populate decay energy

References Library::decay_data(), Library::definition(), DecayResource::get_const_parent_map(), NuclideSet::ids(), LibraryHeader::nuclide_set(), DecayData::q_fractions_from_photons, DecayData::recoverable_energy_values, and Library::set_decay_data().

Referenced by LibraryBuilder::create_decay_library().

void populateCurrentTimes	(	int *	year,
		int *	month,
		int *	day
	)

Referenced by LibraryBuilder::create_library().

void populateLibraryHeader_YieldResource	(	LibraryHeader *	lh,
		const Vec_Int &	sizzzaaa_list,
		const YieldResource &	yr,
		Vec_Int *	fissionable_ids
	)

References YieldResource::fissionable(), NuclideSet::ids_size(), NuclideSet::izzzaaa_at(), NuclideSet::s_at(), NuclideSet::set_ids(), LibraryHeader::set_nuclide_set(), SUBLIB_2AC, and NuclideSet::zzzaaai_at().

Referenced by main().

void populateFissionables	(	Vec_Int *	fissionable_ids,
		const Vec_Int &	sizzzaaa_list,
		const Vec_Int &	transition_ids,
		const Vec_Int &	parent_positions
	)

References NuclideSet::convert_sizzzaaa_to_zzzaaai().

Referenced by LibraryBuilder::create_library().

void populateMass_ids	(	std::vector< float > *	masses,
		const std::vector< int > &	sizzzaaa_list
	)

grabs the masses to use for each nuclide (mass number, A)

Referenced by populateLibraryMass().

std::map<int, CrossSection1d*> Origen::collect_direct_yields	(	int	izzzaaa,
		LibraryNuclide *	ampx_nuclide,
		const DirectYields_t &	direct_yields
	)

Referenced by populateReactionResource_AmpxLibrary(), and TransitionSystemAdapter_AmpxN::update_by_mix().

void populateReactionResource_AmpxLibrary	(	ReactionResource *	rr,
		const AmpxLibrary &	ampx
	)

References ReactionResource::allowed_mts(), collect_direct_yields(), ReactionResource::direct_yields(), ReactionResource::map_xs(), ReactionResource::max_isomeric_state(), populateEnergyBounds_AmpxLibrary(), populateFlux_AmpxLibrary(), RRXs< T >::pyield, ReactionResource::set_disallowed_mts(), ReactionResource::set_library_bounds(), ReactionResource::set_library_flux(), RRXs< T >::totxs, YIELD_DISTRIBUTED, YIELD_ISOMERIC, YIELD_SIMPLE, RRXs< T >::yield_type, and YIELD_UNKNOWN.

Referenced by ReactionResourceIO_ampx::load().

void populateEnergyBounds_AmpxLibrary	(	Vec_Flt *	bounds,
		const AmpxLibrary &	ampx
	)

Referenced by populateReactionResource_AmpxLibrary().

void populateVec_CrossSection1d	(	Vec_Flt *	vec,
		const CrossSection1d &	xs1d
	)

Referenced by populateFlux_AmpxLibrary(), and TransitionSystemAdapter_AmpxN::update().

void populateFlux_AmpxLibrary	(	Vec_Flt *	flux,
		const AmpxLibrary &	ampx,
		int	mix_id,
		int	flux_nuclide_id,
		int	flux_mt
	)

References populateVec_CrossSection1d().

Referenced by populateReactionResource_AmpxLibrary(), and TransitionSystemAdapter_AmpxN::update_by_mix().

void populateLibraryMass	(	Library *	lib,
		const ScaleUtils::IO::DB &	opts
	)

References Library::decay_data(), NuclideResource::default_resource(), Library::definition(), NuclideSet::ids(), DecayData::masses, LibraryHeader::nuclide_set(), populateLibraryMass_NuclideResource(), populateMass_ids(), and Library::set_decay_data().

Referenced by c_Origen_populateLibraryMass(), LibraryIO_s62b::read(), LibraryIO_s61::read(), and LibraryIO_bof::read().

void populateObiwan_dataType	(	ScaleUtils::IO::DB *	base,
		const std::string &	type
	)

Referenced by baseOptions(), and Obiwan_view::populate().

void Origen::populateXs_CrossSection1d	(	Vec_Flt *	xs,
		const CrossSection1d &	xs1d
	)

void printReactionTransitions	(	const LibraryHeader &	lh,
		const TransitionStructure &	tm,
		bool	output_zeros,
		const std::string &	idform,
		std::ostream &	stream
	)

prints reaction transitions on a library

References printTable(), and tabulateReactionTransitions().

Referenced by view().

void printReactionTransitions	(	const Library &	lib,
		bool	output_zeros,
		const std::string &	idform,
		std::ostream &	stream
	)

prints reaction transitions on a library

References Library::definition(), and Library::transition_structure().

void printDecayTable	(	const DecayResource &	dr,
		std::ostream &	stream
	)

prints all decay info on the library

Examples:: tstDecayResourceIO.cpp.

References DecayChannel::get_branch_ratio(), DecayParent::get_const_channel_map(), DecayResource::get_const_parent_map(), DecayChannel::get_const_yield_map(), DecayParent::get_decay_constant(), DecayParent::get_q_fraction_from_photons(), and DecayParent::get_recoverable_energy_value().

Referenced by TEST(), and view().

void printInterpolatedYields	(	const YieldResource &	yr,
		const int	id,
		const double	energy,
		const int	interp,
		std::ostream &	stream
	)

Examples:: tstYieldResource.cpp, and tstYieldResourceIO.cpp.

References YieldParent::data_at(), YieldParent::energy_at(), YieldResource::fissionable(), YieldParent::get_fp_ids(), YieldParent::get_interp_yields(), YieldResource::has_fissionable(), YieldParent::num_energies(), and YieldData::yield_at().

Referenced by Origen::test::TEST(), and TEST_F().

void printYields	(	const YieldResource &	yr,
		std::ostream &	os
	)

Examples:: tstYieldResource.cpp, and tstYieldResourceIO.cpp.

References YieldParent::data_at(), YieldData::energy(), YieldResource::fissionable_at(), YieldResource::get_fissionable_ids(), YieldParent::get_fp_ids(), YieldParent::num_energies(), YieldResource::num_fissionables(), and YieldData::yield_at().

Referenced by main(), Origen::test::TEST(), Origen::test::TEST_F(), TEST_F(), and view().

void printYieldEnergies	(	const YieldResource &	yr,
		std::ostream &	os
	)

Examples:: tstYieldResource.cpp, and tstYieldResourceIO.cpp.

References YieldParent::data_at(), YieldData::energy(), YieldResource::fissionable_at(), YieldResource::get_fissionable_ids(), YieldParent::num_energies(), and YieldResource::num_fissionables().

Referenced by Origen::test::TEST(), and TEST_F().

void printIdTags_json	(	const Library &	lib,
		std::ostream &	os
	)

References TagManager::getIdTag(), TagManager::listIdTags(), and Library::tag_manager().

Referenced by printTags_json().

void printInterpTags_json	(	const Library &	lib,
		std::ostream &	os
	)

References TagManager::getInterpTag(), TagManager::listIdTags(), TagManager::listInterpTags(), and Library::tag_manager().

Referenced by printTags_json().

void printTags_json	(	const Library &	lib,
		const std::string &	file,
		std::ostream &	os
	)

References printIdTags_json(), and printInterpTags_json().

Referenced by Obiwan_interp::execute(), Obiwan_tag::execute(), and view().

void Origen::printTable	(	bool	transpose,
		Table2D *	table,
		std::ostream &	os
	)

Examples:: tsttabulate.cpp.

Referenced by printBurnups(), printFissionXs(), printLossXs(), printNuclideInfo(), printReactionTransitions(), printTransitionCoeff(), and TEST_F().

void printNuclideInfo	(	const Library &	lib,
		int	sizzzaaa,
		bool	transpose,
		const std::string &	idform,
		int	prec,
		std::ostream &	os
	)

References printTable(), and tabulateNuclideInfo().

Referenced by view().

void printBurnups	(	const Library &	lib,
		bool	transpose,
		int	prec,
		std::ostream &	os
	)

References printTable(), and tabulateBurnups().

Referenced by view().

void printFissionXs	(	const Library &	lib,
		int	sizzzaaa,
		bool	transpose,
		const std::string &	idform,
		int	prec,
		int	pos,
		std::ostream &	os
	)

References printTable(), and tabulateFissionXs().

Referenced by view().

void printLossXs	(	const Library &	lib,
		int	sizzzaaa,
		bool	transpose,
		const std::string &	idform,
		int	prec,
		int	pos,
		std::ostream &	os
	)

References printTable(), and tabulateLossXs().

Referenced by view().

void printTransitionCoeff	(	const Library &	lib,
		int	sizzzaaa,
		int	tid,
		bool	transpose,
		bool	output_zeros,
		double	flux,
		bool	output_transition_ids,
		const std::string &	idform,
		int	prec,
		int	pos,
		std::ostream &	os
	)

References printTable(), and tabulateTransitionCoeff().

Referenced by view().

void Origen::printConcentrations_csv	(	const StateSet &	f71,
		ConcentrationUnit	concUnit,
		SP_Library	library,
		const std::string &	idform,
		std::ostream &	os
	)

Examples:: tstStateSet.cpp.

References convertConcUnitToPrettyString(), info(), NOT_GIVEN, printLine_csv(), Concentrations::scp_nuclide_set(), StateSet::scp_states_at(), Concentrations::set_decay_resource(), Concentrations::set_units(), StateSet::states_size(), stringifyNuclide(), Concentrations::total_nuclides(), Concentrations::vals(), and Concentrations::volume().

Referenced by main(), TEST(), and view().

std::string Origen::createContentString ( const State & state )

References State::has_definition(), State::num_alpha_groups(), State::num_beta_groups(), State::num_gamma_groups(), State::num_neutron_groups(), and State::total_nuclides().

Referenced by printStateInfo().

void printStateInfo	(	const StateSet &	state_set,
		int	start_position,
		std::ostream &	os
	)

prints information describing the state_set

References createContentString(), info(), StateSet::scp_states_at(), and StateSet::states_size().

Referenced by c_Origen_printStateInfo(), and view().

void printTags_json	(	const StateSet &	state_set,
		std::ostream &	os
	)

prints information describing the state_set

References info(), StateSet::scp_states_at(), and StateSet::states_size().

void printNeutronProductionRatio	(	const Library &	x,
		int	pos,
		std::ostream &	os
	)

References construct_neutron_prod_map().

Referenced by view().

void printNeutronYields	(	const Library &	x,
		int	pos,
		std::ostream &	os
	)

References construct_neutron_yields_map().

Referenced by view().

void printTimingReport ( std::ostream & os )

Examples:: tstGammaResourceIO.cpp, tstLibraryIO.cpp, tstParallelDepletion.cpp, tstSolver_cram.cpp, tstSolver_matrex.cpp, tstStateSetIO.cpp, and tstTransitionSystemAdapter_AmpxN.cpp.

Referenced by LibraryIOTester::TearDown(), StateSetIOTester::TearDown(), TransitionSystemAdapterTesterJeff252::TearDown(), TEST(), and TEST_P().

void printTransitionSystemXs	(	const TransitionSystem &	ts,
		std::ostream &	os
	)

Examples:: tstTransitionSystemAdapter_AmpxN.cpp.

References TransitionSystem::nuclides(), and stringifyNuclide().

Referenced by TEST_F().

void printEnergyResource	(	const EnergyResource &	re,
		std::ostream &	os
	)

References EnergyResource::getKappaValues().

void Origen::printConcentrations_csv	(	const StateSet &	f71,
		ConcentrationUnit	concUnit,
		std::shared_ptr< Library >	library = `nullptr`,
		const std::string &	idform = `"$S$I$ZZZ$AAA"`,
		std::ostream &	os = `std::cout`
	)

void printLine_csv	(	std::string	id,
		const std::vector< T > &	vals,
		std::ostream &	os = `std::cout`
	)

Referenced by printConcentrations_csv().

void printList	(	const char *	name,
		T *	list,
		std::ostream &	os = `std::cout`
	)

void Origen::printTable	(	bool	transpose,
		ScaleUtils::IO::Table2D *	table,
		std::ostream &	os = `std::cout`
	)

void Origen::tabulateNuclideLabel	(	const Vec_Int &	ids,
		int	sizzzaaa,
		const std::string &	idform,
		const std::string &	units_row,
		Table2D *	table
	)

References NuclideGroupFilter::filter(), and stringifyNuclide().

Referenced by tabulateFissionXs(), tabulateInitialNuclideColumns(), tabulateLossXs(), and tabulateNuclideInfo().

void tabulateInitialNuclideColumns	(	const Vec_Int &	ids,
		ScaleUtils::IO::Table2D *	table
	)

References tabulateNuclideLabel().

Referenced by tabulateMaterialFission(), tabulateMaterialIsotopics(), and tabulateMaterialLoss().

std::vector<const TransitionCoeff*> Origen::getTransitionCoeffList ( const Library & lib )

References Library::transition_coeff_at(), and Library::transition_coeff_size().

Referenced by tabulateLossXs(), and tabulateTransitionCoeff().

void Origen::getPosRange	(	size_t	max_size,
		int	pos,
		size_t &	first_index,
		size_t &	last_index
	)

Referenced by tabulateFissionXs(), tabulateLossXs(), and tabulateTransitionCoeff().

void Origen::tabulateNuclideInfo	(	const Library &	lib,
		int	sizzzaaa,
		const std::string &	idform,
		int	prec,
		Table2D *	table
	)

References DecayData::abund_of_lite_nuclides, kernel_matrex::decay(), DecayData::decay_constants, Library::decay_data(), Library::definition(), NuclideGroupFilter::filter(), NuclideSet::ids(), DecayData::masses, LibraryHeader::nuclide_set(), and tabulateNuclideLabel().

Referenced by printNuclideInfo().

void Origen::tabulateFissionXs	(	const Library &	lib,
		int	sizzzaaa,
		const std::string &	idform,
		int	prec,
		int	pos,
		Table2D *	table
	)

References TransitionCoeff::burnup(), Library::definition(), TransitionCoeff::fission_xs_at(), TransitionCoeff::fission_xs_index(), TransitionCoeff::fission_xs_size(), getPosRange(), NuclideSet::ids(), NuclideSet::ids_at(), NuclideSet::ids_size(), LibraryHeader::nuclide_set(), tabulateNuclideLabel(), Library::transition_coeff_at(), and Library::transition_coeff_size().

Referenced by printFissionXs().

void Origen::tabulateLossXs	(	const Library &	lib,
		int	sizzzaaa,
		const std::string &	idform,
		int	prec,
		int	pos,
		const std::string &	column_name,
		bool	append_column,
		Table2D *	table
	)

Examples:: tsttabulate.cpp.

References Library::definition(), and getTransitionCoeffList().

Referenced by printLossXs(), and TEST().

void Origen::tabulateLossXs	(	const LibraryHeader &	lh,
		const std::vector< const TransitionCoeff * > &	tcoeff_list,
		int	sizzzaaa,
		const std::string &	idform,
		int	prec,
		int	pos,
		const std::string &	column_name,
		bool	append_column,
		Table2D *	table
	)

References getPosRange(), NuclideSet::ids(), NuclideSet::ids_at(), NuclideSet::ids_size(), LibraryHeader::nuclide_set(), and tabulateNuclideLabel().

void Origen::tabulateReactionTransitions	(	const LibraryHeader &	lh,
		const TransitionStructure &	tm,
		bool	output_zeros,
		const std::string &	idform,
		Table2D *	table
	)

References NuclideSet::i_at(), NuclideSet::ids_at(), NuclideSet::ids_size(), LibraryHeader::nuclide_set(), TransitionStructure::num_decay_parents(), TransitionStructure::num_parents(), TransitionStructure::parent_positions(), stringifyNuclide(), and TransitionStructure::transition_ids().

Referenced by printReactionTransitions().

void Origen::tabulateTransitionCoeff	(	const LibraryHeader &	lh,
		const TransitionStructure &	tm,
		const std::vector< const TransitionCoeff * > &	tcoeff_list,
		int	sizzzaaa,
		int	tid,
		bool	output_zeros,
		double	flux,
		bool	output_transition_ids,
		const std::string &	idform,
		int	prec,
		int	pos,
		Table2D *	table
	)

References kernel_rksuite::f(), NuclideGroupFilter::filter(), getPosRange(), NuclideSet::ids_at(), NuclideSet::ids_size(), LibraryHeader::nuclide_set(), TransitionStructure::num_decay_parents(), TransitionStructure::num_parents(), TransitionStructure::parent_positions(), stringifyNuclide(), and TransitionStructure::transition_ids().

Referenced by printTransitionCoeff(), and tabulateTransitionCoeff().

void Origen::tabulateTransitionCoeff	(	const Library &	lib,
		int	sizzzaaa,
		int	tid,
		bool	output_zeros,
		double	flux,
		bool	output_transition_ids,
		const std::string &	idform,
		int	prec,
		int	pos,
		Table2D *	table
	)

References Library::definition(), getTransitionCoeffList(), tabulateTransitionCoeff(), and Library::transition_structure().

void Origen::tabulateBurnups	(	const Library &	lib,
		int	prec,
		Table2D *	table
	)

References TransitionCoeff::burnup(), Library::transition_coeff_at(), and Library::transition_coeff_size().

Referenced by printBurnups().

void tabulateMaterialIsotopics	(	const Material &	mat,
		size_t	point,
		ScaleUtils::IO::Table2D *	table,
		SCP_Vec_Int &	base_ids
	)

Examples:: tsttabulate.cpp.

References Material::get_numden_at(), Material::library(), Material::name(), and tabulateInitialNuclideColumns().

Referenced by TEST_F().

void tabulateMaterialTransitionRates	(	const Material &	mat,
		size_t	step,
		ScaleUtils::IO::Table2D *	table,
		SCP_TransitionStructure &	base_tstruct
	)

Examples:: tsttabulate.cpp.

References Material::amount_at(), Material::flux_over(), NuclideSet::ids_at(), NuclideSet::ids_size(), Material::library(), Material::name(), stringifyNuclide(), Material::total_nuclides(), and Material::transition_matrix_over().

Referenced by TEST_F().

void tabulateMaterialLoss	(	const Material &	mat,
		size_t	step,
		ScaleUtils::IO::Table2D *	table,
		bool &	append,
		int	type
	)

References kernel_matrex::decay(), Material::flux(), Material::library(), Material::name(), tabulateInitialNuclideColumns(), and Material::transition_matrix_over().

Referenced by tabulateMaterialDecayConstant(), tabulateMaterialLossRate(), and tabulateMaterialLossXs().

void tabulateMaterialLossXs	(	const Material &	mat,
		size_t	step,
		ScaleUtils::IO::Table2D *	table,
		bool &	append
	)

References tabulateMaterialLoss().

void tabulateMaterialLossRate	(	const Material &	mat,
		size_t	step,
		ScaleUtils::IO::Table2D *	table,
		bool &	append
	)

Examples:: tsttabulate.cpp.

References tabulateMaterialLoss().

Referenced by TEST_F().

void tabulateMaterialDecayConstant	(	const Material &	mat,
		size_t	step,
		ScaleUtils::IO::Table2D *	table,
		bool &	append
	)

References tabulateMaterialLoss().

void tabulateMaterialFission	(	const Material &	mat,
		size_t	step,
		ScaleUtils::IO::Table2D *	table,
		bool &	append,
		int	type
	)

References Material::flux(), NuclideSet::ids_at(), NuclideSet::ids_size(), Material::library(), Material::name(), NuclideSet::s_at(), SUBLIB_2AC, tabulateInitialNuclideColumns(), and Material::transition_matrix_over().

Referenced by tabulateMaterialFissionRate(), and tabulateMaterialFissionXs().

void tabulateMaterialFissionXs	(	const Material &	mat,
		size_t	step,
		ScaleUtils::IO::Table2D *	table,
		bool &	append
	)

References tabulateMaterialFission().

void tabulateMaterialFissionRate	(	const Material &	mat,
		size_t	step,
		ScaleUtils::IO::Table2D *	table,
		bool &	append
	)

Examples:: tsttabulate.cpp.

References tabulateMaterialFission().

Referenced by TEST_F().

void Origen::tabulateNuclideLabel	(	const LibraryHeader &	lh,
		int	sizzzaaa,
		const std::string &	idform,
		const std::string &	units_row,
		ScaleUtils::IO::Table2D *	table
	)

void Origen::tabulateNuclideInfo	(	const Library &	lib,
		int	sizzzaaa,
		const std::string &	idform,
		int	prec,
		ScaleUtils::IO::Table2D *	table
	)

void Origen::tabulateFissionXs	(	const Library &	lib,
		int	sizzzaaa,
		const std::string &	idform,
		int	prec,
		int	pos,
		ScaleUtils::IO::Table2D *	table
	)

void Origen::tabulateLossXs	(	const Library &	lib,
		int	sizzzaaa,
		const std::string &	idform,
		int	prec,
		int	pos,
		const std::string &	column_name,
		bool	append_column,
		ScaleUtils::IO::Table2D *	table
	)

void Origen::tabulateLossXs	(	const LibraryHeader &	lh,
		const std::vector< const TransitionCoeff * > &	tcoeff_list,
		int	sizzzaaa,
		const std::string &	idform,
		int	prec,
		int	pos,
		const std::string &	column_name,
		bool	append_column,
		ScaleUtils::IO::Table2D *	table
	)

void Origen::tabulateTransitionCoeff	(	const Library &	lib,
		int	sizzzaaa,
		int	tid,
		bool	output_zeros,
		double	flux,
		bool	transition_ids,
		const std::string &	idform,
		int	prec,
		int	pos,
		ScaleUtils::IO::Table2D *	table
	)

void Origen::tabulateTransitionCoeff	(	const LibraryHeader &	lh,
		const TransitionStructure &	tm,
		const std::vector< const TransitionCoeff * > &	tcoeff_list,
		int	sizzzaaa,
		int	tid,
		bool	output_zeros,
		double	flux,
		bool	transition_ids,
		const std::string &	idform,
		int	prec,
		int	pos,
		ScaleUtils::IO::Table2D *	table
	)

void Origen::tabulateBurnups	(	const Library &	lib,
		int	prec,
		ScaleUtils::IO::Table2D *	table
	)

void Origen::tabulateReactionTransitions	(	const LibraryHeader &	lh,
		const TransitionStructure &	tm,
		bool	output_zeros,
		const std::string &	idform,
		ScaleUtils::IO::Table2D *	table
	)

DecayResource* Origen::loadDecayResource	(	const Str	path,
		ScaleUtils::IO::DB	opts
	)

inline

Examples:: tstTransitionSystemAdapter_DecayResource.cpp.

Referenced by loadMulti(), and LibraryBuilderTester::SetUp().

bool Origen::saveDecayResource	(	const DecayResource &	obj,
		const Str	path,
		ScaleUtils::IO::DB	opts
	)

inline

GammaResource* Origen::loadGammaResource	(	const Str	path,
		ScaleUtils::IO::DB	opts
	)

inline

bool Origen::saveGammaResource	(	const GammaResource &	obj,
		const Str	path,
		ScaleUtils::IO::DB	opts
	)

inline

double Origen::guess_last_bin_energy	(	size_t	nc,
		Vec_Dbl &	e,
		size_t	next
	)

Referenced by GammaResourceIO_cimg::read().

Library* Origen::loadLibrary	(	const Str	path,
		ScaleUtils::IO::DB	opts
	)

inline

Examples:: tstCRAM.cpp, tstLibraryIO.cpp, and tstParallelDepletion.cpp.

Referenced by Obiwan_interp::execute(), Obiwan_patch::execute(), interpLibraryND(), loadMulti(), main(), TEST(), TEST_F(), and tstCRAM::tstCRAM().

bool Origen::saveLibrary	(	const Library &	obj,
		const Str	path,
		ScaleUtils::IO::DB	opts
	)

inline

Examples:: tstinterp.cpp, tstLibraryIO.cpp, tstObiwan.cpp, tstTransitionSystemAdapter_AmpxN.cpp, and tstTransitionSystemAdapter_DecayResource.cpp.

Referenced by convertLibrary(), Obiwan_interp::execute(), Obiwan_patch::execute(), Obiwan_tag::execute(), main(), TEST(), and TEST_F().

char Origen::endian_selector ( const std::string & end )

Referenced by LibraryIO_s61::save().

NuclideResource* Origen::loadNuclideResource	(	const Str	path,
		ScaleUtils::IO::DB	opts
	)

inline

bool Origen::saveNuclideResource	(	const NuclideResource &	obj,
		const Str	path,
		ScaleUtils::IO::DB	opts
	)

inline

ReactionResource* Origen::loadReactionResource	(	const Str	path,
		ScaleUtils::IO::DB	opts
	)

inline

bool Origen::saveReactionResource	(	const ReactionResource &	obj,
		const Str	path,
		ScaleUtils::IO::DB	opts
	)

inline

StateSet* Origen::loadStateSet	(	const Str	path,
		ScaleUtils::IO::DB	opts
	)

inline

Examples:: tstio.cpp, and tstStateSetIO.cpp.

Referenced by loadMulti(), TEST(), TEST_F(), and TEST_P().

bool Origen::saveStateSet	(	const StateSet &	obj,
		const Str	path,
		ScaleUtils::IO::DB	opts
	)

inline

YieldResource* Origen::loadYieldResource	(	const Str	path,
		ScaleUtils::IO::DB	opts
	)

inline

Examples:: tstYieldResourceIO.cpp.

Referenced by loadMulti(), main(), and Origen::test::TEST().

bool Origen::saveYieldResource	(	const YieldResource &	obj,
		const Str	path,
		ScaleUtils::IO::DB	opts
	)

inline

Examples:: tstYieldResourceIO.cpp.

Referenced by main(), and Origen::test::TEST().

std::string Origen::_to_id_string ( int id )

Referenced by DecayResource::to_json().

void defaultNuclideResource ( Origen::NuclideResource * nr )

add default contents to a nuclide resource

Examples:: tstConcentrations.cpp, and tstTransitionSystemAdapter_DecayResource.cpp.

References populateNuclideResource_StdComp().

Referenced by NuclideResource::NuclideResource(), LibraryBuilderTester::SetUp(), and TEST().

void get_default_kappas	(	const std::vector< int > &	sizzzaaa_list,
		std::vector< float > &	kappa_capture,
		std::vector< float > &	kappa_fission
	)

grabs the default values for the energy release (MeV) per capture/fission NOTE: fission values are only for sublibrary, s == 2

References EnergyResource::getKappaValues().

Referenced by LibraryIO_bof::read(), LibraryIO_s62b::read(), and LibraryIO_s61::read().

bool Origen::id_matches	(	SP_Transition	transition,
		int	product_id
	)

std::string yield_type_name ( const YieldType yt )

References YIELD_DISTRIBUTED, YIELD_ISOMERIC, YIELD_MISSING, and YIELD_SIMPLE.

Referenced by ReactionResource::print().

ScaleUtils::IO::DB Origen::baseOptions ( Standard::CommandLine & cmd )

References populateObiwan_dataType(), and version().

Referenced by Obiwan_convert::populate(), Obiwan_tag::populate(), Obiwan_patch::populate(), and Obiwan_interp::populate().

int Origen::info	(	const StateSet &	state_set,
		ScaleUtils::IO::DB	opts,
		std::ostream &	out,
		std::ostream &	err
	)

Examples:: tstGridView.cpp.

Referenced by StateSet::create_interp_times(), StateSet::create_interp_viewers(), Obiwan_info::execute(), StateSet::interpolate_internal(), kernel_cram(), StateSet::matching_states(), StateSet::nearest_time(), printConcentrations_csv(), printStateInfo(), printTags_json(), StateSetIO_s61::read(), and TEST().

int Origen::info	(	const Library &	lib,
		ScaleUtils::IO::DB	opts,
		std::ostream &	out,
		std::ostream &	err
	)

int Origen::info	(	const DecayResource &	dr,
		ScaleUtils::IO::DB	opts,
		std::ostream &	out,
		std::ostream &	err
	)

int Origen::info	(	const YieldResource &	yr,
		ScaleUtils::IO::DB	opts,
		std::ostream &	out,
		std::ostream &	err
	)

static ScaleUtils::IO::DB Origen::baseOptions ( )

static

std::string Origen::splash ( )

Referenced by obiwan_main().

std::string Origen::random_line ( std::string mode )

Referenced by obiwan_main().

std::string Origen::help ( )

Examples:: tstObiwan.cpp.

Referenced by obiwan_main(), and TYPED_TEST_P().

int Origen::obiwan_main	(	Vec_Str	args,
		std::ostream &	out,
		std::ostream &	err
	)

Examples:: tstObiwan.cpp.

Referenced by main(), and TEST().

int obiwan_main	(	int	argc,
		char **	argv,
		std::ostream &	out,
		std::ostream &	err
	)

References Obiwan_convert::execute(), Obiwan_info::execute(), Obiwan_view::execute(), Obiwan_interp::execute(), Obiwan_tag::execute(), Obiwan_patch::execute(), Obiwan_diff::execute(), help(), random_line(), and splash().

std::string Origen::applyPatch	(	SP_Library	fromLib,
		IntegerList *	coeffPosList,
		const std::string &	coeffData,
		SP_Library	lib,
		int	pos
	)

Referenced by Obiwan_patch::execute().

static ScaleUtils::IO::DB Origen::baseOptions ( )

static

int Origen::view	(	const Origen::Library &	lib,
		ScaleUtils::IO::DB	opts,
		std::ostream &	out,
		std::ostream &	err
	)

Examples:: tstLibrary.cpp.

References TransitionGroupFilter::allow_decay, TransitionGroupFilter::allow_fission, TransitionGroupFilter::allow_reaction, COPY_LIST, graphvizLibrary(), printBurnups(), printFissionXs(), printLossXs(), printNeutronProductionRatio(), printNeutronYields(), printNuclideInfo(), printReactionTransitions(), printTags_json(), printTransitionCoeff(), and Library::to_json().

Referenced by Obiwan_view::execute(), and TEST().

int Origen::view	(	const StateSet &	state_set,
		ScaleUtils::IO::DB	opts,
		std::ostream &	out,
		std::ostream &	err
	)

References convertStringToConcUnit(), NOT_GIVEN, printConcentrations_csv(), printStateInfo(), and printTags_json().

int Origen::view	(	const DecayResource &	decay_resource,
		ScaleUtils::IO::DB	opts,
		std::ostream &	out,
		std::ostream &	err
	)

References printDecayTable().

int Origen::view	(	const YieldResource &	yield_resource,
		ScaleUtils::IO::DB	opts,
		std::ostream &	out,
		std::ostream &	err
	)

References printYields().

const char* Origen::version ( )

Referenced by baseOptions(), LibraryIO_bof::read(), and setAppVersionWrite().

const char* Origen::config ( const char * field = "" )

std::string Origen::doIndent ( int indent )

Referenced by CompManager::toString().

std::string Origen::toYesNo ( bool yes_no )

Referenced by CompManager::toString().

void Origen::setup_search_variables	(	const std::vector< NuclideId > &	in_sizzzaaa_list,
		std::map< NuclideId, size_t > &	nind_lookup
	)

Referenced by LibraryBuilder::create_decay_transitions(), LibraryBuilder::create_reaction_transitions(), and LibraryBuilder::search_reaction_transitions().

bool Origen::check_sizes	(	size_t	total_nuclides,
		size_t	total_transitions,
		std::vector< int > &	num_decay_parents,
		std::vector< int > &	num_parents,
		std::vector< int > &	parent_positions,
		std::vector< int > &	transition_ids,
		std::vector< double > &	transition_coeff
	)

Referenced by LibraryBuilder::create_decay_transitions(), and LibraryBuilder::create_reaction_transitions().

void Origen::vector_copy	(	size_t	nelem,
		size_t	start,
		const std::vector< T > *	old_list,
		std::vector< T > &	new_list
	)

Referenced by LibraryBuilder::create_reaction_transitions().

void Origen::shrink_to_fit ( std::vector< T > & x )

Referenced by LibraryBuilder::create_decay_transitions().

double Origen::calculate_neutron_production_xs ( SP_Nuclide residual )

References NEUTRON_FIELD.

Referenced by LibraryBuilder::create_reaction_transitions(), and LibraryBuilder::update_reaction_transitions().

std::map<int, std::pair<CrossSection1d*, SP_Transition> > Origen::collect_direct_yields	(	SP_Field	neutron_field,
		SP_Nuclide	nuclide,
		int	izzzaaa,
		TS_t	ts,
		LibraryNuclide *	ampx_nuclide,
		const DirectYields_t &	direct_yields
	)

Variable Documentation

const int TIME_S = 1

const int TIME_M = 2

const int TIME_H = 3

const int TIME_D = 4

const int TIME_Y = 5

const int SUBLIB_LEGACY_ELEMENT = 4

const int INTERP_PREFERRED = 0

static

const int INTERP_HISTOGRAM = 1

static

const int INTERP_LINLIN = 2

static

Examples:: tstYieldResourceIO.cpp.

Referenced by Origen::test::TEST().

const int INTERP_LINLOG = 3

static

const int INTERP_LOGLIN = 4

static

const int INTERP_LOGLOG = 5

static

const int IMPLICIT_BYPRODUCT_MAX_MASSNUMBER = 4

static

Referenced by YieldResource::check_consistency().

Namespaces

Classes

Typedefs

Enumerations

Functions

Variables

Detailed Description

Typedef Documentation

Enumeration Type Documentation

Function Documentation

Variable Documentation